Curated BLAST for Genomes

 

Curated BLAST

Searching in Escherichia coli BW25113 (Keio)

Found 4 curated entries in PaperBLAST's database that match '1.1.1.122' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Escherichia coli BW25113, or try another query

b0356: alcohol dehydrogenase class III/glutathione-dependent formaldehyde dehydrogenase (NCBI)
is similar to:
PaperBLAST

Q97YM2: D-threo-aldose 1-dehydrogenase (EC 1.1.1.122) from Saccharolobus solfataricus

30% id,
96% cov

b1478: alcohol dehydrogenase (VIMSS)
is similar to:
PaperBLAST

Q97YM2: D-threo-aldose 1-dehydrogenase (EC 1.1.1.122) from Saccharolobus solfataricus

29% id,
90% cov

b4358: predicted oxidoreductase, Zn-dependent and NAD(P)-binding (RefSeq)
is similar to:
PaperBLAST

Q97YM2: D-threo-aldose 1-dehydrogenase (EC 1.1.1.122) from Saccharolobus solfataricus

31% id,
83% cov

b2091: galactitol-1-phosphate dehydrogenase, Zn-dependent and NAD(P)-binding (NCBI)
is similar to:
PaperBLAST

Q97YM2: D-threo-aldose 1-dehydrogenase (EC 1.1.1.122) from Saccharolobus solfataricus

26% id,
92% cov

b1771: predicted oxidoreductase (NCBI)
is similar to:
PaperBLAST

BPHYT_RS34225: L-fucose dehydrogenase (EC 1.1.1.122) from Burkholderia phytofirmans

25% id,
92% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1853021-1854004 (frame -1) on 7023
is similar to:
PaperBLAST

FCDH_PSESP / Q52472: D-threo-aldose 1-dehydrogenase; L-fucose dehydrogenase; EC 1.1.1.122 from Pseudomonas sp.

28% id,
98% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory