Curated BLAST for Genomes


Curated BLAST

Searching in Escherichia coli BW25113 (Keio)

Found 9 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Escherichia coli BW25113, or try another query

b2020: histidinol dehydrogenase (NCBI)
is similar to:

HISX_ECOLI / P06988: Histidinol dehydrogenase; HDH; EC from Escherichia coli
hisD / P06988: histidinal/histidinol dehydrogenase (EC from Escherichia coli
P06988: histidinol dehydrogenase (EC from Escherichia coli

100% id,
100% cov

HISX_SALTY / P10370: Histidinol dehydrogenase; HDH; EC from Salmonella typhimurium

92% id,
100% cov

his2 / RF|NP_595886.1: histidinol dehydrogenase His2 (predicted); EC from Schizosaccharomyces pombe

46% id,
96% cov


b2026: bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein (NCBI)
is similar to:

HIS2_YEAST / P00815: Histidine biosynthesis trifunctional protein; EC; EC; EC from Saccharomyces cerevisiae

34% id,
24% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory