Curated BLAST for Genomes

 

Curated BLAST

Searching in Escherichia coli BW25113 (Keio)

Found 50 curated entries in PaperBLAST's database that match '1.1.1.25' as complete word(s).

These curated entries have 36 distinct sequences.

Running ublast with E ≤ 0.01

Found 9 relevant proteins in Escherichia coli BW25113, or try another query

b3281: dehydroshikimate reductase, NAD(P)-binding (NCBI)
is similar to:
PaperBLAST

AROE_ECOLI / P15770: Shikimate dehydrogenase (NADP(+)); SD; SDH; EC 1.1.1.25 from Escherichia coli
AroE / b3281: shikimate dehydrogenase (EC 1.1.1.25) from Escherichia coli
aroE / P15770: shikimate dehydrogenase (EC 1.1.1.25) from Escherichia coli
P15770: shikimate dehydrogenase (EC 1.1.1.25) from Escherichia coli

100% id,
100% cov

A0A1K3RIC7: shikimate dehydrogenase (EC 1.1.1.25) from Mycobacterium tuberculosis

60% id,
100% cov

Q88RQ5: shikimate dehydrogenase (EC 1.1.1.25) from Pseudomonas putida

50% id,
99% cov

More...

b1692: quinate/shikimate 5-dehydrogenase, NAD(P)-binding (NCBI)
is similar to:
PaperBLAST

AROE_LISMO / Q8Y9N5: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Listeria monocytogenes

49% id,
97% cov

AROE_METJA / Q58484: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Methanocaldococcus jannaschii
aroE / Q58484: shikimate dehydrogenase monomer (EC 1.1.1.25) from Methanocaldococcus jannaschii

36% id,
98% cov

AROE_GEOKA / Q5KWX7: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Geobacillus kaustophilus

36% id,
97% cov

More...

b1693: 3-dehydroquinate dehydratase (NCBI)
is similar to:
PaperBLAST

A0A168S2G5: shikimate dehydrogenase (EC 1.1.1.25) from Vitis vinifera

32% id,
44% cov

A0A168S2H6: shikimate dehydrogenase (EC 1.1.1.25) from Vitis vinifera

29% id,
44% cov

Q6PUF9: shikimate dehydrogenase (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Nicotiana tabacum

28% id,
42% cov

More...

b0043: predicted oxidoreductase with FAD/NAD(P)-binding domain (NCBI)
is similar to:
PaperBLAST

O27957: shikimate dehydrogenase (EC 1.1.1.25) from Archaeoglobus fulgidus

25% id,
54% cov

b1210: glutamyl-tRNA reductase (NCBI)
is similar to:
PaperBLAST

Q88RQ5: shikimate dehydrogenase (EC 1.1.1.25) from Pseudomonas putida

35% id,
33% cov

AROE_VIBCH / Q9KVT3: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Vibrio cholerae

33% id,
29% cov

A0A168S2G5: shikimate dehydrogenase (EC 1.1.1.25) from Vitis vinifera

24% id,
27% cov

More...

b0908: 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI)
is similar to:
PaperBLAST

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

40% id,
28% cov

ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans
aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans
P07547: shikimate dehydrogenase (EC 1.1.1.25) from Aspergillus nidulans

40% id,
27% cov

Q6W3D0: shikimate dehydrogenase (EC 1.1.1.25) from Toxoplasma gondii

33% id,
4% cov

More...

b3081: 2,4-dienoyl-CoA reductase, NADH and FMN-linked (NCBI)
is similar to:
PaperBLAST

D7TUX1: shikimate dehydrogenase (EC 1.1.1.25) from Vitis vinifera

23% id,
41% cov

b3389: 3-dehydroquinate synthase (NCBI)
is similar to:
PaperBLAST

ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans
aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans
P07547: shikimate dehydrogenase (EC 1.1.1.25) from Aspergillus nidulans

40% id,
22% cov

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

38% id,
21% cov

Q6W3D0: shikimate dehydrogenase (EC 1.1.1.25) from Toxoplasma gondii

36% id,
4% cov

b0388: shikimate kinase II (NCBI)
is similar to:
PaperBLAST

ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans
aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans
P07547: shikimate dehydrogenase (EC 1.1.1.25) from Aspergillus nidulans

29% id,
10% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory