Curated BLAST for Genomes

 

Curated BLAST

Searching in Escherichia coli BW25113 (Keio)

Found 64 curated entries in PaperBLAST's database that match '1.1.1.27' as complete word(s).

These curated entries have 50 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Escherichia coli BW25113, or try another query

b1241: fused acetaldehyde-CoA dehydrogenase/iron-dependent alcohol dehydrogenase/pyruvate-formate lyase deactivase (NCBI)
is similar to:
PaperBLAST

I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum

50% id,
98% cov

b3236: malate dehydrogenase (NCBI)
is similar to:
PaperBLAST

LDH_LACLN / D8KFT1: L-lactate dehydrogenase; L-LDH; EC 1.1.1.27 from Lactococcus lactis

29% id,
97% cov

B9MKZ8: L-lactate dehydrogenase (EC 1.1.1.27) from Caldicellulosiruptor bescii

27% id,
97% cov

LDH: lactate dehydrogenase; EC 1.1.1.27 from Plasmodium falciparum
LDH / GB|ABA46354.1: lactate dehydrogenase; EC 1.1.1.27 from Plasmodium falciparum
Q27743: L-lactate dehydrogenase (EC 1.1.1.27) from Plasmodium falciparum

28% id,
90% cov

More...

b1734: cryptic phospho-beta-glucosidase, NAD(P)-binding (NCBI)
is similar to:
PaperBLAST

LDH_PLABA / Q7SI97: L-lactate dehydrogenase; EC 1.1.1.27 from Plasmodium berghei

21% id,
86% cov

Q8I8U5: L-lactate dehydrogenase (EC 1.1.1.27) from Eimeria acervulina

25% id,
59% cov

b2453: ethanolamine utilization; homolog of Salmonella enzyme, similar to iron-containing alcohol dehydrogenase (VIMSS)
is similar to:
PaperBLAST

I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum

36% id,
49% cov

b3589: predicted Fe-containing alcohol dehydrogenase (NCBI)
is similar to:
PaperBLAST

I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum

39% id,
44% cov

b2799: L-1,2-propanediol oxidoreductase (NCBI)
is similar to:
PaperBLAST

I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum

37% id,
46% cov

b2455: predicted aldehyde dehydrogenase, ethanolamine utilization protein (NCBI)
is similar to:
PaperBLAST

I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum

30% id,
52% cov

b3011: alcohol dehydrogenase, NAD(P)-dependent (NCBI)
is similar to:
PaperBLAST

I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum

26% id,
46% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory