Curated BLAST for Genomes

 

Curated BLAST

Searching in Escherichia coli BW25113 (Keio)

Found 3 curated entries in PaperBLAST's database that match '1.1.1.368'.

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 0 relevant proteins in Escherichia coli BW25113, or try another query

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 4 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

342090-343151 (frame +3) on 7023
is similar to:
PaperBLAST

HAD_THAAR / O87871: 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase; EC 1.1.1.368 from Thauera aromatica
had / O87871: 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase subunit (EC 1.1.1.368) from Thauera aromatica
O87871: 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase (EC 1.1.1.368) from Thauera aromatica

28% id,
89% cov

1550858-1551916 (frame -1) on 7023
is similar to:
PaperBLAST

HAD_THAAR / O87871: 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase; EC 1.1.1.368 from Thauera aromatica
had / O87871: 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase subunit (EC 1.1.1.368) from Thauera aromatica
O87871: 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase (EC 1.1.1.368) from Thauera aromatica

28% id,
90% cov

4493219-4494340 (frame -1) on 7023
is similar to:
PaperBLAST

HAD_THAAR / O87871: 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase; EC 1.1.1.368 from Thauera aromatica
had / O87871: 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase subunit (EC 1.1.1.368) from Thauera aromatica
O87871: 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase (EC 1.1.1.368) from Thauera aromatica

26% id,
92% cov

1372984-1374033 (frame +1) on 7023
is similar to:
PaperBLAST

HAD_THAAR / O87871: 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase; EC 1.1.1.368 from Thauera aromatica
had / O87871: 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase subunit (EC 1.1.1.368) from Thauera aromatica
O87871: 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase (EC 1.1.1.368) from Thauera aromatica

28% id,
50% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory