Curated BLAST for Genomes

 

Curated BLAST

Searching in Escherichia coli BW25113 (Keio)

Found 72 curated entries in PaperBLAST's database that match '1.1.1.42' as complete word(s).

These curated entries have 51 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Escherichia coli BW25113, or try another query

b1136: isocitrate dehydrogenase (NCBI)
is similar to:
PaperBLAST

IDH_ECOLI / P08200: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Escherichia coli
IcdE / b1136: isocitrate dehydrogenase (EC 1.1.1.42) from Escherichia coli
icd / P08200: isocitrate dehydrogenase (EC 1.1.1.42) from Escherichia coli

100% id,
100% cov

D0Z8Y6: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Edwardsiella tarda

90% id,
100% cov

IDH_PSEAB / Q02NB5: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Pseudomonas aeruginosa

79% id,
99% cov

More...

b1800: predicted dehydrogenase (NCBI)
is similar to:
PaperBLAST

Q9HLV8: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Thermoplasma acidophilum

30% id,
89% cov

IDH_HALVD / D4GU92: Isocitrate dehydrogenase [NADP]; IDH; ICDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Haloferax volcanii

29% id,
92% cov

icd / Q5UXA4: isocitrate dehydrogenase, NADP (EC 1.1.1.42) from Haloarcula marismortui

30% id,
86% cov

More...

b0073: 3-isopropylmalate dehydrogenase (VIMSS)
is similar to:
PaperBLAST

IDH_HALVD / D4GU92: Isocitrate dehydrogenase [NADP]; IDH; ICDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Haloferax volcanii

29% id,
93% cov

P96318: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Caldococcus noboribetus

29% id,
90% cov

Q9YE81: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Aeropyrum pernix

28% id,
90% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory