Curated BLAST for Genomes

 

Curated BLAST

Searching in Escherichia coli BW25113 (Keio)

Found 4 curated entries in PaperBLAST's database that match '1.1.1.57' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Escherichia coli BW25113, or try another query

b4323: D-mannonate oxidoreductase, NAD-binding (NCBI)
is similar to:
PaperBLAST

UxuB / b4323: D-mannonate oxidoreductase (EC 1.1.1.57) from Escherichia coli
uxuB / P39160: D-mannonate oxidoreductase (EC 1.1.1.57) from Escherichia coli

100% id,
100% cov

b1542: predicted mannonate dehydrogenase (NCBI)
is similar to:
PaperBLAST

UxuB / b4323: D-mannonate oxidoreductase (EC 1.1.1.57) from Escherichia coli
uxuB / P39160: D-mannonate oxidoreductase (EC 1.1.1.57) from Escherichia coli

57% id,
99% cov

b2172: predicted dehydrogenase, NAD-dependent (NCBI)
is similar to:
PaperBLAST

UxuB / b4323: D-mannonate oxidoreductase (EC 1.1.1.57) from Escherichia coli
uxuB / P39160: D-mannonate oxidoreductase (EC 1.1.1.57) from Escherichia coli

56% id,
99% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory