Curated BLAST for Genomes

 

Curated BLAST

Searching in Escherichia coli BW25113 (Keio)

Found 17 curated entries in PaperBLAST's database that match '1.1.1.6' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 19 relevant proteins in Escherichia coli BW25113, or try another query

b3945: glycerol dehydrogenase, (NAD) (VIMSS)
is similar to:
PaperBLAST

GLDA_ECOLI / P0A9S5: Glycerol dehydrogenase; GDH; GLDH; EC 1.1.1.6 from Escherichia coli
GldA / b3945: L-1,2-propanediol dehydrogenase / glycerol dehydrogenase (EC 1.1.1.75; EC 1.1.1.6) from Escherichia coli
gldA / RF|NP_418380: glycerol dehydrogenase; EC 1.1.1.6 from Escherichia coli
gldA / P0A9S5: L-1,2-propanediol dehydrogenase / glycerol dehydrogenase (EC 1.1.1.75; EC 1.1.1.6) from Escherichia coli

100% id,
100% cov

A0MLR7: glycerol dehydrogenase (EC 1.1.1.6) from Klebsiella pneumoniae

100% id,
97% cov

Q8ZKM9: glycerol dehydrogenase (EC 1.1.1.6) from Salmonella enterica

92% id,
100% cov

More...

b2453: ethanolamine utilization; homolog of Salmonella enzyme, similar to iron-containing alcohol dehydrogenase (VIMSS)
is similar to:
PaperBLAST

ADH1_GEOTN / A4IP64: Long-chain-alcohol dehydrogenase 1; Alcohol dehydrogenase 1; ADH1; Fatty alcohol oxidoreductase 1; Glycerol dehydrogenase; EC 1.1.1.192; EC 1.1.1.6 from Geobacillus thermodenitrificans

39% id,
95% cov

dhaD / GB|AAB48844.1: glycerol dehydrogenase; EC 1.1.1.6 from Citrobacter freundii

26% id,
79% cov

b2842: 2-deoxy-D-gluconate 3-dehydrogenase (NCBI)
is similar to:
PaperBLAST

GOLD_LISIN / Q92EU6: NAD-dependent glycerol dehydrogenase; Dha-forming NAD-dependent glycerol dehydrogenase; EC 1.1.1.6 from Listeria innocua

35% id,
96% cov

b2426: putative oxidoreductase (VIMSS)
is similar to:
PaperBLAST

GOLD_LISIN / Q92EU6: NAD-dependent glycerol dehydrogenase; Dha-forming NAD-dependent glycerol dehydrogenase; EC 1.1.1.6 from Listeria innocua

35% id,
96% cov

b2799: L-1,2-propanediol oxidoreductase (NCBI)
is similar to:
PaperBLAST

ADH1_GEOTN / A4IP64: Long-chain-alcohol dehydrogenase 1; Alcohol dehydrogenase 1; ADH1; Fatty alcohol oxidoreductase 1; Glycerol dehydrogenase; EC 1.1.1.192; EC 1.1.1.6 from Geobacillus thermodenitrificans

34% id,
96% cov

b1619: 7-alpha-hydroxysteroid dehydrogenase (NCBI)
is similar to:
PaperBLAST

GOLD_LISIN / Q92EU6: NAD-dependent glycerol dehydrogenase; Dha-forming NAD-dependent glycerol dehydrogenase; EC 1.1.1.6 from Listeria innocua

34% id,
96% cov

b3589: predicted Fe-containing alcohol dehydrogenase (NCBI)
is similar to:
PaperBLAST

ADH1_GEOTN / A4IP64: Long-chain-alcohol dehydrogenase 1; Alcohol dehydrogenase 1; ADH1; Fatty alcohol oxidoreductase 1; Glycerol dehydrogenase; EC 1.1.1.192; EC 1.1.1.6 from Geobacillus thermodenitrificans

33% id,
97% cov

b0599: predicted oxidoreductase (NCBI)
is similar to:
PaperBLAST

Q9WYQ4: glycerol dehydrogenase (EC 1.1.1.6) from Thermotoga maritima

33% id,
98% cov

bedD / GB|AAC44426.1: glycerol dehydrogenase; EC 1.1.1.6 from Pseudomonas putida

33% id,
96% cov

GLDA_ECOLI / P0A9S5: Glycerol dehydrogenase; GDH; GLDH; EC 1.1.1.6 from Escherichia coli
GldA / b3945: L-1,2-propanediol dehydrogenase / glycerol dehydrogenase (EC 1.1.1.75; EC 1.1.1.6) from Escherichia coli
gldA / RF|NP_418380: glycerol dehydrogenase; EC 1.1.1.6 from Escherichia coli
gldA / P0A9S5: L-1,2-propanediol dehydrogenase / glycerol dehydrogenase (EC 1.1.1.75; EC 1.1.1.6) from Escherichia coli

31% id,
97% cov

More...

b1241: fused acetaldehyde-CoA dehydrogenase/iron-dependent alcohol dehydrogenase/pyruvate-formate lyase deactivase (NCBI)
is similar to:
PaperBLAST

ADH1_GEOTN / A4IP64: Long-chain-alcohol dehydrogenase 1; Alcohol dehydrogenase 1; ADH1; Fatty alcohol oxidoreductase 1; Glycerol dehydrogenase; EC 1.1.1.192; EC 1.1.1.6 from Geobacillus thermodenitrificans

33% id,
96% cov

b2902: predicted NAD(P)-binding oxidoreductase with NAD(P)-binding Rossmann-fold domain (NCBI)
is similar to:
PaperBLAST

GOLD_LISIN / Q92EU6: NAD-dependent glycerol dehydrogenase; Dha-forming NAD-dependent glycerol dehydrogenase; EC 1.1.1.6 from Listeria innocua

32% id,
93% cov

b2774: putative oxidoreductase (VIMSS)
is similar to:
PaperBLAST

GOLD_LISIN / Q92EU6: NAD-dependent glycerol dehydrogenase; Dha-forming NAD-dependent glycerol dehydrogenase; EC 1.1.1.6 from Listeria innocua

30% id,
100% cov

b0596: 2,3-dihydroxybenzoate-2,3-dehydrogenase (NCBI)
is similar to:
PaperBLAST

GOLD_LISIN / Q92EU6: NAD-dependent glycerol dehydrogenase; Dha-forming NAD-dependent glycerol dehydrogenase; EC 1.1.1.6 from Listeria innocua

31% id,
96% cov

b4266: gluconate 5-dehydrogenase (NCBI)
is similar to:
PaperBLAST

GOLD_LISIN / Q92EU6: NAD-dependent glycerol dehydrogenase; Dha-forming NAD-dependent glycerol dehydrogenase; EC 1.1.1.6 from Listeria innocua

31% id,
96% cov

b1093: 3-oxoacyl-[acyl-carrier-protein] reductase (NCBI)
is similar to:
PaperBLAST

GOLD_LISIN / Q92EU6: NAD-dependent glycerol dehydrogenase; Dha-forming NAD-dependent glycerol dehydrogenase; EC 1.1.1.6 from Listeria innocua

31% id,
95% cov

b4249: predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain (NCBI)
is similar to:
PaperBLAST

GOLD_LISIN / Q92EU6: NAD-dependent glycerol dehydrogenase; Dha-forming NAD-dependent glycerol dehydrogenase; EC 1.1.1.6 from Listeria innocua

28% id,
94% cov

b2705: 3-ketoacyl-(acyl-carrier-protein) reductase (NCBI)
is similar to:
PaperBLAST

GOLD_LISIN / Q92EU6: NAD-dependent glycerol dehydrogenase; Dha-forming NAD-dependent glycerol dehydrogenase; EC 1.1.1.6 from Listeria innocua

27% id,
94% cov

b3011: alcohol dehydrogenase, NAD(P)-dependent (NCBI)
is similar to:
PaperBLAST

ADH1_GEOTN / A4IP64: Long-chain-alcohol dehydrogenase 1; Alcohol dehydrogenase 1; ADH1; Fatty alcohol oxidoreductase 1; Glycerol dehydrogenase; EC 1.1.1.192; EC 1.1.1.6 from Geobacillus thermodenitrificans

27% id,
96% cov

b1606: short chain dehydrogenase (NCBI)
is similar to:
PaperBLAST

GOLD_LISIN / Q92EU6: NAD-dependent glycerol dehydrogenase; Dha-forming NAD-dependent glycerol dehydrogenase; EC 1.1.1.6 from Listeria innocua

23% id,
93% cov

b0493: short chain dehydrogenase (NCBI)
is similar to:
PaperBLAST

GOLD_LISIN / Q92EU6: NAD-dependent glycerol dehydrogenase; Dha-forming NAD-dependent glycerol dehydrogenase; EC 1.1.1.6 from Listeria innocua

24% id,
85% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 18 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory