Curated BLAST for Genomes

 

Curated BLAST

Searching in Escherichia coli BW25113 (Keio)

Found 59 curated entries in PaperBLAST's database that match '1.1.1.85' as complete word(s).

These curated entries have 45 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Escherichia coli BW25113, or try another query

b0073: 3-isopropylmalate dehydrogenase (VIMSS)
is similar to:
PaperBLAST

LEU3_ECOLI / P30125: 3-isopropylmalate dehydrogenase; 3-IPM-DH; Beta-IPM dehydrogenase; IMDH; EC 1.1.1.85 from Escherichia coli
LeuB / b0073: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) from Escherichia coli
leuB / P30125: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) from Escherichia coli
P30125: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) from Escherichia coli

100% id,
100% cov

LEU3_SALTY / P37412: 3-isopropylmalate dehydrogenase; 3-IPM-DH; Beta-IPM dehydrogenase; IMDH; EC 1.1.1.85 from Salmonella typhimurium
P37412: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) from Salmonella enterica

95% id,
100% cov

D2YZL2: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) from Shewanella benthica

70% id,
100% cov

More...

b1800: predicted dehydrogenase (NCBI)
is similar to:
PaperBLAST

YeaU / b1800: D-malate/3-isopropylmalate dehydrogenase (decarboxylating) (EC 1.1.1.83; EC 1.1.1.85; EC 1.1.1.93) from Escherichia coli
dmlA / P76251: D-malate/3-isopropylmalate dehydrogenase (decarboxylating) (EC 1.1.1.83; EC 1.1.1.85; EC 1.1.1.93) from Escherichia coli

100% id,
100% cov

P94929: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) from Mycobacterium tuberculosis

43% id,
93% cov

LEU3_MYCTU / P9WKK9: 3-isopropylmalate dehydrogenase; 3-IPM-DH; Beta-IPM dehydrogenase; IMDH; EC 1.1.1.85 from Mycobacterium tuberculosis

43% id,
93% cov

More...

b1136: isocitrate dehydrogenase (NCBI)
is similar to:
PaperBLAST

LEU3_METJA / Q58130: 3-isopropylmalate/3-methylmalate dehydrogenase; 3-isopropylmalate dehydrogenase; 3-IPM-DH; IMDH; IPMDH; Beta-IPM dehydrogenase; D-malate dehydrogenase [decarboxylating]; EC 1.1.1.85; EC 1.1.1.n5; EC 1.1.1.83 from Methanocaldococcus jannaschii
MJ0720 / Q58130: 3-isopropylmalate dehydrogenase subunit (EC 1.1.1.85) from Methanocaldococcus jannaschii

33% id,
98% cov

LEU3_ACIFR / Q56268: 3-isopropylmalate dehydrogenase; 3-IPM-DH; Beta-IPM dehydrogenase; IMDH; EC 1.1.1.85 from Acidithiobacillus ferrooxidans
Q56268: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) from Acidithiobacillus ferrooxidans

27% id,
89% cov

Q72IW9: isocitrate-homoisocitrate dehydrogenase (EC 1.1.1.286); 3-isopropylmalate dehydrogenase (EC 1.1.1.85) from Thermus thermophilus

36% id,
48% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory