Curated BLAST for Genomes


Curated BLAST

Searching in Escherichia coli BW25113 (Keio)

Found 9 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Escherichia coli BW25113, or try another query

b3605: L-lactate dehydrogenase, FMN-linked (NCBI)
is similar to:

lldD: L-lactate dehydrogenase [cytochrome]; EC from Escherichia coli

100% id,
100% cov

PS417_19130: L-lactate dehydrogenase (cytochrome) (EC from Pseudomonas simiae

76% id,
100% cov

SM_b20850: L-lactate dehydrogenase (cytochrome) (EC from Sinorhizobium meliloti

48% id,
98% cov


The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory