Curated BLAST for Genomes


Curated BLAST

Searching in Escherichia coli BW25113 (Keio)

Found 10 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Escherichia coli BW25113, or try another query

b0124: glucose dehydrogenase (NCBI)
is similar to:

DHG_ECOLI / P15877: Quinoprotein glucose dehydrogenase; Glucose dehydrogenase [pyrroloquinoline-quinone]; EC from Escherichia coli
Gcd / b0124: quinoprotein glucose dehydrogenase (EC from Escherichia coli
gcd / GB|BAB96699.1: quinoprotein glucose dehydrogenase; EC from Escherichia coli
gcd / P15877: quinoprotein glucose dehydrogenase (EC from Escherichia coli

100% id,
100% cov

D4P700: glucose 1-dehydrogenase (PQQ, quinone) (EC from Pantoea ananatis

73% id,
100% cov

A0A0J6JEN3: glucose 1-dehydrogenase (PQQ, quinone) (EC from Pseudomonas taetrolens

60% id,
99% cov

b0837: predicted dehydrogenase (NCBI)
is similar to:

I7A144: glucose 1-dehydrogenase (PQQ, quinone) (EC from Thermus thermophilus

34% id,
95% cov

Q8ZUN8: glucose 1-dehydrogenase (PQQ, quinone) (EC from Pyrobaculum aerophilum

34% id,
95% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory