Curated BLAST for Genomes

 

Curated BLAST

Searching in Escherichia coli BW25113 (Keio)

Found 27 curated entries in PaperBLAST's database that match '1.13.11.27'.

These curated entries have 21 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Escherichia coli BW25113, or try another query

b1435: putative collagenase (VIMSS)
is similar to:
PaperBLAST

Q9RSJ4: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Salvia miltiorrhiza

38% id,
39% cov

b2081: predicted peptidase (NCBI)
is similar to:
PaperBLAST

Q9RSJ4: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Salvia miltiorrhiza

35% id,
25% cov

Q9RSJ4: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Salvia miltiorrhiza

33% id,
16% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory