Curated BLAST for Genomes


Curated BLAST

Searching in Escherichia coli BW25113 (Keio)

Found 5 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Escherichia coli BW25113, or try another query

b2659: orf, hypothetical protein (VIMSS)
is similar to:

GLAH_ECOLI / P76621: Glutarate 2-hydroxylase; G-2-H; Carbon starvation induced protein D; EC from Escherichia coli
GlaH / b2659: glutarate hydroxylase GlaH (EC from Escherichia coli
glaH / P76621: glutarate dioxygenase GlaH (EC from Escherichia coli

100% id,
100% cov

GLAH_PSEPK / Q88IU0: Glutarate 2-hydroxylase; G-2-H; EC from Pseudomonas putida
csiD / Q88IU0: glutarate dioxygenase monomer (EC from Pseudomonas putida

68% id,
100% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory