Curated BLAST for Genomes

 

Curated BLAST

Searching in Escherichia coli BW25113 (Keio)

Found 21 curated entries in PaperBLAST's database that match '1.2.1.27' as complete word(s).

These curated entries have 17 distinct sequences.

Running ublast with E ≤ 0.01

Found 11 relevant proteins in Escherichia coli BW25113, or try another query

b1385: phenylacetaldehyde dehydrogenase (VIMSS)
is similar to:
PaperBLAST

BWI76_RS03070: Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) from Klebsiella michiganensis

35% id,
96% cov

G5CZI2: methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) from Oceanimonas doudoroffii

34% id,
92% cov

BAUC_PSEAE / Q9I702: Malonate-semialdehyde dehydrogenase; 3-oxopropanoate dehydrogenase; EC 1.2.1.27 from Pseudomonas aeruginosa

33% id,
94% cov

More...

b0312: betaine aldehyde dehydrogenase, NAD-dependent (NCBI)
is similar to:
PaperBLAST

CCNA_01360: Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) from Caulobacter crescentus

34% id,
96% cov

IOLA_BACSU / P42412: Malonate-semialdehyde dehydrogenase; MSA dehydrogenase; Methylmalonate-semialdehyde dehydrogenase; MMSA dehydrogenase; MMSDH; MSDH; EC 1.2.1.27 from Bacillus subtilis
mmsA / P42412: (methyl)malonate-semialdehyde dehydrogenase monomer (EC 1.2.1.27; EC 1.2.1.18) from Bacillus subtilis
P42412: methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) from Bacillus subtilis

32% id,
98% cov

MMSA_PSEAE / P28810: Methylmalonate-semialdehyde dehydrogenase [acylating]; MMSDH; EC 1.2.1.27 from Pseudomonas aeruginosa
mmsA / P28810: methylmalonate-semialdehyde dehydrogenase subunit (EC 1.2.1.27) from Pseudomonas aeruginosa

32% id,
96% cov

More...

b1444: medium chain aldehyde dehydrogenase (NCBI)
is similar to:
PaperBLAST

MMSA_PSEAE / P28810: Methylmalonate-semialdehyde dehydrogenase [acylating]; MMSDH; EC 1.2.1.27 from Pseudomonas aeruginosa
mmsA / P28810: methylmalonate-semialdehyde dehydrogenase subunit (EC 1.2.1.27) from Pseudomonas aeruginosa

33% id,
95% cov

PfGW456L13_5146: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) from Pseudomonas fluorescens

31% id,
93% cov

Pf1N1B4_1229: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) from Pseudomonas fluorescens

31% id,
94% cov

More...

b2661: succinate-semialdehyde dehydrogenase I, NADP-dependent (NCBI)
is similar to:
PaperBLAST

IOLA_BACSU / P42412: Malonate-semialdehyde dehydrogenase; MSA dehydrogenase; Methylmalonate-semialdehyde dehydrogenase; MMSA dehydrogenase; MMSDH; MSDH; EC 1.2.1.27 from Bacillus subtilis
mmsA / P42412: (methyl)malonate-semialdehyde dehydrogenase monomer (EC 1.2.1.27; EC 1.2.1.18) from Bacillus subtilis
P42412: methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) from Bacillus subtilis

33% id,
96% cov

BAUC_PSEAE / Q9I702: Malonate-semialdehyde dehydrogenase; 3-oxopropanoate dehydrogenase; EC 1.2.1.27 from Pseudomonas aeruginosa

34% id,
91% cov

dntE / Q8VUC5: methylmalonate-semialdehyde dehydrogenase subunit (EC 1.2.1.27) from Burkholderia cepacia

34% id,
90% cov

More...

b3588: aldehyde dehydrogenase B (lactaldehyde dehydrogenase) (VIMSS)
is similar to:
PaperBLAST

IOLA_BACSU / P42412: Malonate-semialdehyde dehydrogenase; MSA dehydrogenase; Methylmalonate-semialdehyde dehydrogenase; MMSA dehydrogenase; MMSDH; MSDH; EC 1.2.1.27 from Bacillus subtilis
mmsA / P42412: (methyl)malonate-semialdehyde dehydrogenase monomer (EC 1.2.1.27; EC 1.2.1.18) from Bacillus subtilis
P42412: methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) from Bacillus subtilis

32% id,
98% cov

Q97YT9: methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) from Saccharolobus solfataricus

31% id,
93% cov

BWI76_RS03070: Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) from Klebsiella michiganensis

31% id,
91% cov

More...

b1300: gamma-Glu-gamma-aminobutyraldehyde dehydrogenase, NAD(P)H-dependent (NCBI)
is similar to:
PaperBLAST

Pf1N1B4_1229: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) from Pseudomonas fluorescens

33% id,
93% cov

CCNA_01360: Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) from Caulobacter crescentus

32% id,
94% cov

IOLA_BACSU / P42412: Malonate-semialdehyde dehydrogenase; MSA dehydrogenase; Methylmalonate-semialdehyde dehydrogenase; MMSA dehydrogenase; MMSDH; MSDH; EC 1.2.1.27 from Bacillus subtilis
mmsA / P42412: (methyl)malonate-semialdehyde dehydrogenase monomer (EC 1.2.1.27; EC 1.2.1.18) from Bacillus subtilis
P42412: methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) from Bacillus subtilis

32% id,
96% cov

More...

b1415: aldehyde dehydrogenase A, NAD-linked (NCBI)
is similar to:
PaperBLAST

MMSA_PSEAE / P28810: Methylmalonate-semialdehyde dehydrogenase [acylating]; MMSDH; EC 1.2.1.27 from Pseudomonas aeruginosa
mmsA / P28810: methylmalonate-semialdehyde dehydrogenase subunit (EC 1.2.1.27) from Pseudomonas aeruginosa

31% id,
96% cov

Psest_2436: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) from Pseudomonas stutzeri

31% id,
95% cov

dntE / Q8VUC5: methylmalonate-semialdehyde dehydrogenase subunit (EC 1.2.1.27) from Burkholderia cepacia

32% id,
93% cov

More...

b1525: putative aldehyde dehydrogenase (VIMSS)
is similar to:
PaperBLAST

IOLA_BACSU / P42412: Malonate-semialdehyde dehydrogenase; MSA dehydrogenase; Methylmalonate-semialdehyde dehydrogenase; MMSA dehydrogenase; MMSDH; MSDH; EC 1.2.1.27 from Bacillus subtilis
mmsA / P42412: (methyl)malonate-semialdehyde dehydrogenase monomer (EC 1.2.1.27; EC 1.2.1.18) from Bacillus subtilis
P42412: methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) from Bacillus subtilis

32% id,
89% cov

BWI76_RS03070: Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) from Klebsiella michiganensis

31% id,
90% cov

BAUC_PSEAE / Q9I702: Malonate-semialdehyde dehydrogenase; 3-oxopropanoate dehydrogenase; EC 1.2.1.27 from Pseudomonas aeruginosa

31% id,
89% cov

More...

b1746: succinylglutamic semialdehyde dehydrogenase (NCBI)
is similar to:
PaperBLAST

BAUC_PSEAE / Q9I702: Malonate-semialdehyde dehydrogenase; 3-oxopropanoate dehydrogenase; EC 1.2.1.27 from Pseudomonas aeruginosa

31% id,
89% cov

G5CZI2: methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) from Oceanimonas doudoroffii

31% id,
89% cov

BWI76_RS03070: Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) from Klebsiella michiganensis

26% id,
100% cov

More...

b1014: fused DNA-binding transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase (NCBI)
is similar to:
PaperBLAST

MMSA_PSEAE / P28810: Methylmalonate-semialdehyde dehydrogenase [acylating]; MMSDH; EC 1.2.1.27 from Pseudomonas aeruginosa
mmsA / P28810: methylmalonate-semialdehyde dehydrogenase subunit (EC 1.2.1.27) from Pseudomonas aeruginosa

31% id,
84% cov

Pf1N1B4_1229: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) from Pseudomonas fluorescens

27% id,
93% cov

G5CZI2: methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) from Oceanimonas doudoroffii

29% id,
86% cov

More...

b1241: fused acetaldehyde-CoA dehydrogenase/iron-dependent alcohol dehydrogenase/pyruvate-formate lyase deactivase (NCBI)
is similar to:
PaperBLAST

Q97YT9: methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) from Saccharolobus solfataricus

24% id,
80% cov

CCNA_01360: Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) from Caulobacter crescentus

22% id,
86% cov

BWI76_RS03070: Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) from Klebsiella michiganensis

22% id,
74% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 10 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1611345-1612784 (frame -3) on 7023
is similar to:
PaperBLAST

BAUC_PSEAE / Q9I702: Malonate-semialdehyde dehydrogenase; 3-oxopropanoate dehydrogenase; EC 1.2.1.27 from Pseudomonas aeruginosa
Also see hits to annotated proteins above

30% id,
93% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory