Curated BLAST for Genomes

 

Curated BLAST

Searching in Escherichia coli BW25113 (Keio)

Found 8 curated entries in PaperBLAST's database that match '1.3.1.13' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Escherichia coli BW25113, or try another query

b2600: fused chorismate mutase T/prephenate dehydrogenase (NCBI)
is similar to:
PaperBLAST

BT3933: prephenate dehydrogenase (EC 1.3.1.13) from Bacteroides thetaiotaomicron

23% id,
98% cov

b2599: fused chorismate mutase P/prephenate dehydratase (NCBI)
is similar to:
PaperBLAST

A8AAX2: prephenate dehydrogenase (NADP+) (EC 1.3.1.13) from Ignicoccus hospitalis

32% id,
26% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Did not find any hits to reading frames.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory