Curated BLAST for Genomes

 

Curated BLAST

Searching in Escherichia coli BW25113 (Keio)

Found 3 curated entries in PaperBLAST's database that match '1.3.8.10'.

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Escherichia coli BW25113, or try another query

b1695: putative oxidoreductase (VIMSS)
is similar to:
PaperBLAST

Q39QF5: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase (EC 1.3.8.10) from Geobacter metallireducens

34% id,
99% cov

CH1CO_SYNAS / Q2LQN9: Cyclohex-1-ene-1-carbonyl-CoA dehydrogenase; Ch1CoA; EC 1.3.8.10 from Syntrophus aciditrophicus
SYN_02587 / Q2LQN9: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase monomer (EC 1.3.8.10) from Syntrophus aciditrophicus

33% id,
91% cov

b0039: crotonobetaine reductase subunit II, FAD-binding (NCBI)
is similar to:
PaperBLAST

Q39QF5: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase (EC 1.3.8.10) from Geobacter metallireducens

30% id,
99% cov

CH1CO_SYNAS / Q2LQN9: Cyclohex-1-ene-1-carbonyl-CoA dehydrogenase; Ch1CoA; EC 1.3.8.10 from Syntrophus aciditrophicus
SYN_02587 / Q2LQN9: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase monomer (EC 1.3.8.10) from Syntrophus aciditrophicus

28% id,
91% cov

b4187: putative acyl coenzyme A dehydrogenase (VIMSS)
is similar to:
PaperBLAST

Q39QF5: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase (EC 1.3.8.10) from Geobacter metallireducens

27% id,
80% cov

CH1CO_SYNAS / Q2LQN9: Cyclohex-1-ene-1-carbonyl-CoA dehydrogenase; Ch1CoA; EC 1.3.8.10 from Syntrophus aciditrophicus
SYN_02587 / Q2LQN9: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase monomer (EC 1.3.8.10) from Syntrophus aciditrophicus

29% id,
71% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory