Curated BLAST for Genomes

 

Curated BLAST

Searching in Escherichia coli BW25113 (Keio)

Found 19 curated entries in PaperBLAST's database that match '1.3.8.5' as complete word(s).

These curated entries have 17 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Escherichia coli BW25113, or try another query

b1695: putative oxidoreductase (VIMSS)
is similar to:
PaperBLAST

AO356_26355: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

33% id,
99% cov

Pf6N2E2_1146: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

33% id,
99% cov

Psest_2445: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas stutzeri

32% id,
98% cov

More...

b0039: crotonobetaine reductase subunit II, FAD-binding (NCBI)
is similar to:
PaperBLAST

Pf1N1B4_4787: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

32% id,
99% cov

PfGW456L13_2983: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

32% id,
99% cov

AO353_25680: 2-methylbutanoyl-CoA dehydrogenase / butanoyl-CoA dehydrogenase / isobutyryl-CoA dehydrogenase (EC 1.3.8.1; EC 1.3.8.5) from Pseudomonas fluorescens

31% id,
99% cov

More...

b0221: putative acyl-CoA dehydrogenase (EC 1.3.99.-) (VIMSS)
is similar to:
PaperBLAST

acdH / Q9XCG5: acyl-CoA dehydrogenase subunit (EC 1.3.8.4; EC 1.3.8.5) from Streptomyces avermitilis

27% id,
99% cov

PS417_13840: isobutyryl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas simiae

27% id,
96% cov

PfGW456L13_2983: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

27% id,
96% cov

More...

b4187: putative acyl coenzyme A dehydrogenase (VIMSS)
is similar to:
PaperBLAST

Psest_2440: isobutyryl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas stutzeri

29% id,
84% cov

PfGW456L13_2983: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

32% id,
75% cov

PfGW456L13_2985: isobutyryl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

26% id,
91% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory