Curated BLAST for Genomes

 

Curated BLAST

Searching in Escherichia coli BW25113 (Keio)

Found 48 curated entries in PaperBLAST's database that match '2.1.3.3' as complete word(s).

These curated entries have 32 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Escherichia coli BW25113, or try another query

b0273: CP4-6 prophage; ornithine carbamoyltransferase 2, chain F (NCBI)
is similar to:
PaperBLAST

OTC2_ECOLI / P06960: Ornithine carbamoyltransferase subunit F; OTCase-2; EC 2.1.3.3 from Escherichia coli
ArgF / b0273: CP4-6 prophage; ornithine carbamoyltransferase ArgF (EC 2.1.3.3) from Escherichia coli
argF / P06960: CP4-6 prophage; ornithine carbamoyltransferase ArgF (EC 2.1.3.3) from Escherichia coli

100% id,
100% cov

OTC1_ECOLI / P04391: Ornithine carbamoyltransferase subunit I; OTCase-1; EC 2.1.3.3 from Escherichia coli
ArgI / b4254: ornithine carbamoyltransferase ArgI (EC 2.1.3.3) from Escherichia coli
argI / GB|AAA23483.1: ornithine carbamoyltransferase, subunit I; EC 2.1.3.3 from Escherichia coli
argI / P04391: ornithine carbamoyltransferase ArgI (EC 2.1.3.3) from Escherichia coli

88% id,
100% cov

OTCC_PSEAE / P08308: Ornithine carbamoyltransferase, catabolic; OTCase; EC 2.1.3.3 from Pseudomonas aeruginosa

58% id,
99% cov

More...

b4254: ornithine carbamoyltransferase 1 (NCBI)
is similar to:
PaperBLAST

OTC1_ECOLI / P04391: Ornithine carbamoyltransferase subunit I; OTCase-1; EC 2.1.3.3 from Escherichia coli
ArgI / b4254: ornithine carbamoyltransferase ArgI (EC 2.1.3.3) from Escherichia coli
argI / GB|AAA23483.1: ornithine carbamoyltransferase, subunit I; EC 2.1.3.3 from Escherichia coli
argI / P04391: ornithine carbamoyltransferase ArgI (EC 2.1.3.3) from Escherichia coli

100% id,
100% cov

OTC2_ECOLI / P06960: Ornithine carbamoyltransferase subunit F; OTCase-2; EC 2.1.3.3 from Escherichia coli
ArgF / b0273: CP4-6 prophage; ornithine carbamoyltransferase ArgF (EC 2.1.3.3) from Escherichia coli
argF / P06960: CP4-6 prophage; ornithine carbamoyltransferase ArgF (EC 2.1.3.3) from Escherichia coli

88% id,
100% cov

OTCC_PSEAE / P08308: Ornithine carbamoyltransferase, catabolic; OTCase; EC 2.1.3.3 from Pseudomonas aeruginosa

58% id,
99% cov

More...

b4245: aspartate carbamoyltransferase catalytic subunit (NCBI)
is similar to:
PaperBLAST

argF / P18186: ArgF (EC 2.1.3.3) from Bacillus subtilis

34% id,
95% cov

Q98BB6: ornithine carbamoyltransferase (EC 2.1.3.3) from Mesorhizobium loti

31% id,
99% cov

OTCA_PYRFU / Q51742: Ornithine carbamoyltransferase, anabolic; OTCase; EC 2.1.3.3 from Pyrococcus furiosus
Q51742: ornithine carbamoyltransferase (EC 2.1.3.3) from Pyrococcus furiosus

31% id,
99% cov

More...

b2870: hypothetical protein (NCBI)
is similar to:
PaperBLAST

OTC2_ECOLI / P06960: Ornithine carbamoyltransferase subunit F; OTCase-2; EC 2.1.3.3 from Escherichia coli
ArgF / b0273: CP4-6 prophage; ornithine carbamoyltransferase ArgF (EC 2.1.3.3) from Escherichia coli
argF / P06960: CP4-6 prophage; ornithine carbamoyltransferase ArgF (EC 2.1.3.3) from Escherichia coli

28% id,
99% cov

OTCC_PSEAE / P08308: Ornithine carbamoyltransferase, catabolic; OTCase; EC 2.1.3.3 from Pseudomonas aeruginosa

26% id,
99% cov

OTC_MYCBO / P0A5M9: Ornithine carbamoyltransferase; OTCase; EC 2.1.3.3 from Mycobacterium bovis
OTC_MYCTU / P9WIT9: Ornithine carbamoyltransferase; OTCase; EC 2.1.3.3 from Mycobacterium tuberculosis
P0A5M9: ornithine carbamoyltransferase (EC 2.1.3.3) from Mycobacterium tuberculosis
P9WIT9: ornithine carbamoyltransferase (EC 2.1.3.3) from Mycobacterium tuberculosis

26% id,
97% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory