Curated BLAST for Genomes

 

Curated BLAST

Searching in Escherichia coli BW25113 (Keio)

Found 11 curated entries in PaperBLAST's database that match '2.3.3.21' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Escherichia coli BW25113, or try another query

b0074: 2-isopropylmalate synthase (NCBI)
is similar to:
PaperBLAST

CIMA_METJA / Q58787: (R)-citramalate synthase CimA; EC 2.3.3.21 from Methanocaldococcus jannaschii
cimA / Q58787: (R)-citratemalate synthase subunit (EC 2.3.3.21) from Methanocaldococcus jannaschii
Q58787: (R)-citramalate synthase (EC 2.3.3.21) from Methanocaldococcus jannaschii

38% id,
100% cov

DVU1914: (R)-citramalate synthase (EC 2.3.3.21) from Desulfovibrio vulgaris

28% id,
100% cov

B0K6M2: (R)-citramalate synthase (EC 2.3.3.21) from Thermoanaerobacter sp.

28% id,
98% cov

More...

b0352: 4-hydroxy-2-ketovalerate aldolase (NCBI)
is similar to:
PaperBLAST

CIMA_LEPIN / Q8F3Q1: (R)-citramalate synthase CimA; LiCMS; EC 2.3.3.21 from Leptospira interrogans
cimA / Q8F3Q1: (R)-citramalate synthase subunit (EC 2.3.3.21) from Leptospira interrogans

24% id,
58% cov

B0K6M2: (R)-citramalate synthase (EC 2.3.3.21) from Thermoanaerobacter sp.

28% id,
19% cov

DVU1914: (R)-citramalate synthase (EC 2.3.3.21) from Desulfovibrio vulgaris

34% id,
15% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory