Curated BLAST for Genomes


Curated BLAST

Searching in Escherichia coli BW25113 (Keio)

Found 8 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Escherichia coli BW25113, or try another query

b1439: fused predicted DNA-binding transcriptional regulator/predicted amino transferase (NCBI)
is similar to:

Q8PVS9: O-phospho-L-seryl-tRNA:Cys-tRNA synthase (EC from Methanosarcina mazei

21% id,
68% cov

b2530: cysteine desulfurase (NCBI)
is similar to:

A4FWT8: O-phospho-L-seryl-tRNA:Cys-tRNA synthase (EC from Methanococcus maripaludis

28% id,
40% cov

Q12W26: O-phospho-L-seryl-tRNA:Cys-tRNA synthase (EC from Methanococcoides burtonii

23% id,
42% cov

SPSS_METJA / Q59072: O-phospho-L-seryl-tRNA:Cys-tRNA synthase; Sep-tRNA:Cys-tRNA synthase; SepCysS; EC from Methanocaldococcus jannaschii
pscS / Q59072: Sep-tRNA:Cys-tRNA synthase monomer (EC from Methanocaldococcus jannaschii
Q59072: O-phospho-L-seryl-tRNA:Cys-tRNA synthase (EC from Methanocaldococcus jannaschii

24% id,
36% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1757333-1758598 (frame -1) on 7023
is similar to:

SPSS1_ARCFU / O30207: O-phospho-L-seryl-tRNA:Cys-tRNA synthase 1; Sep-tRNA:Cys-tRNA synthase 1; SepCysS 1; EC from Archaeoglobus fulgidus
O30207: O-phospho-L-seryl-tRNA:Cys-tRNA synthase (EC from Archaeoglobus fulgidus

24% id,
35% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory