Curated BLAST for Genomes

 

Curated BLAST

Searching in Escherichia coli BW25113 (Keio)

Found 9 curated entries in PaperBLAST's database that match '2.7.1.16' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Escherichia coli BW25113, or try another query

b0063: ribulokinase (NCBI)
is similar to:
PaperBLAST

ARAB_ECOLI / P08204: Ribulokinase; EC 2.7.1.16 from Escherichia coli
AraB / b0063: ribulokinase (EC 2.7.1.16) from Escherichia coli
araB: ribulokinase; EC 2.7.1.16 from Escherichia coli
araB / P08204: ribulokinase (EC 2.7.1.16) from Escherichia coli

100% id,
100% cov

Echvi_0515: Ribulokinase (EC 2.7.1.16) from Echinicola vietnamensis

49% id,
99% cov

CA265_RS08625: Ribulokinase (EC 2.7.1.16) from Pedobacter sp.

50% id,
95% cov

More...

b1511: putative kinase (VIMSS)
is similar to:
PaperBLAST

Echvi_0515: Ribulokinase (EC 2.7.1.16) from Echinicola vietnamensis

22% id,
95% cov

b2776: predicted kinase (NCBI)
is similar to:
PaperBLAST

Echvi_0515: Ribulokinase (EC 2.7.1.16) from Echinicola vietnamensis

28% id,
31% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory