Curated BLAST for Genomes

 

Curated BLAST

Searching in Escherichia coli BW25113 (Keio)

Found 29 curated entries in PaperBLAST's database that match '2.7.1.17' as complete word(s).

These curated entries have 24 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Escherichia coli BW25113, or try another query

b3564: xylulokinase (NCBI)
is similar to:
PaperBLAST

XYLB_ECOLI / P09099: Xylulose kinase; XK; Xylulokinase; 1-deoxy-D-xylulokinase; EC 2.7.1.17; EC 2.7.1.- from Escherichia coli
XylB / b3564: xylulokinase (EC 2.7.1.17) from Escherichia coli
xylB / GB|AAC76588.1: xylulokinase; EC 2.7.1.17 from Escherichia coli
xylB / P09099: xylulokinase (EC 2.7.1.17) from Escherichia coli

100% id,
100% cov

BWI76_RS27020: Xylulose kinase (EC 2.7.1.17) from Klebsiella michiganensis

85% id,
100% cov

Dshi_1997: Xylulose kinase (EC 2.7.1.17) from Dinoroseobacter shibae

48% id,
100% cov

More...

b3580: L-xylulose kinase (NCBI)
is similar to:
PaperBLAST

SMc03164: Xylulose kinase (EC 2.7.1.17) from Sinorhizobium meliloti

29% id,
99% cov

C7NMH3: xylulokinase (EC 2.7.1.17) from Halorhabdus utahensis

29% id,
97% cov

Q9WXX1: xylulokinase (EC 2.7.1.17) from Thermotoga maritima

28% id,
98% cov

More...

b1511: putative kinase (VIMSS)
is similar to:
PaperBLAST

C7NMH3: xylulokinase (EC 2.7.1.17) from Halorhabdus utahensis

29% id,
95% cov

AO356_27695: Xylulose kinase (EC 2.7.1.17) from Pseudomonas fluorescens

25% id,
95% cov

Q9WXX1: xylulokinase (EC 2.7.1.17) from Thermotoga maritima

24% id,
97% cov

More...

b2803: L-fuculokinase (NCBI)
is similar to:
PaperBLAST

AO356_27695: Xylulose kinase (EC 2.7.1.17) from Pseudomonas fluorescens

27% id,
92% cov

mtlY / Q4KC52: xylulose kinase (EC 2.7.1.17) from Pseudomonas fluorescens

27% id,
90% cov

Pf6N2E2_805: Xylulose kinase (EC 2.7.1.17) from Pseudomonas fluorescens

27% id,
89% cov

More...

b3926: glycerol kinase (NCBI)
is similar to:
PaperBLAST

XYLB_LEVBR / P35850: Xylulose kinase; Xylulokinase; EC 2.7.1.17 from Levilactobacillus brevis

22% id,
98% cov

Dshi_1997: Xylulose kinase (EC 2.7.1.17) from Dinoroseobacter shibae

24% id,
90% cov

b2776: predicted kinase (NCBI)
is similar to:
PaperBLAST

Q9WXX1: xylulokinase (EC 2.7.1.17) from Thermotoga maritima

25% id,
73% cov

b0063: ribulokinase (NCBI)
is similar to:
PaperBLAST

Dshi_1997: Xylulose kinase (EC 2.7.1.17) from Dinoroseobacter shibae

23% id,
30% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory