Curated BLAST for Genomes

 

Curated BLAST

Searching in Escherichia coli BW25113 (Keio)

Found 17 curated entries in PaperBLAST's database that match '2.7.1.39' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Escherichia coli BW25113, or try another query

b0003: homoserine kinase (NCBI)
is similar to:
PaperBLAST

KHSE_ECOLI / P00547: Homoserine kinase; HK; HSK; EC 2.7.1.39 from Escherichia coli
ThrB / b0003: homoserine kinase (EC 2.7.1.39) from Escherichia coli
thrB / GB|BAB96580.2: homoserine kinase; EC 2.7.1.39 from Escherichia coli
thrB / P00547: homoserine kinase (EC 2.7.1.39) from Escherichia coli

100% id,
100% cov

Echvi_2001: homoserine kinase (EC 2.7.1.39) from Echinicola vietnamensis

37% id,
89% cov

CA265_RS23470: homoserine kinase (EC 2.7.1.39) from Pedobacter sp.

35% id,
89% cov

More...

b3390: shikimate kinase I (NCBI)
is similar to:
PaperBLAST

thrB / B8DPL9: homoserine kinase (EC 2.7.1.39) from Desulfovibrio vulgaris
DvMF_0971: Homoserine kinase (EC:2.7.1.39) from Desulfovibrio vulgaris

35% id,
86% cov

b1208: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (NCBI)
is similar to:
PaperBLAST

CA265_RS23470: homoserine kinase (EC 2.7.1.39) from Pedobacter sp.

24% id,
91% cov

b0388: shikimate kinase II (NCBI)
is similar to:
PaperBLAST

thrB / B8DPL9: homoserine kinase (EC 2.7.1.39) from Desulfovibrio vulgaris
DvMF_0971: Homoserine kinase (EC:2.7.1.39) from Desulfovibrio vulgaris

27% id,
77% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3516571-3517305 (frame -2) on 7023
is similar to:
PaperBLAST

thrB / B8DPL9: homoserine kinase (EC 2.7.1.39) from Desulfovibrio vulgaris
DvMF_0971: Homoserine kinase (EC:2.7.1.39) from Desulfovibrio vulgaris
Also see hits to annotated proteins above

34% id,
90% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory