Curated BLAST for Genomes


Curated BLAST

Searching in Escherichia coli BW25113 (Keio)

Found 5 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Escherichia coli BW25113, or try another query

b1009: predicted hydrolase (NCBI)
is similar to:

Q0SH24: 3-oxoadipate enol-lactonase (EC; 4-carboxymuconolactone decarboxylase (EC from Rhodococcus jostii

27% id,
63% cov

b0686: hypothetical protein (NCBI)
is similar to:

AO353_17230: Beta-ketoadipate enol-lactone hydrolase (EC from Pseudomonas fluorescens

28% id,
39% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory