Curated BLAST for Genomes

 

Curated BLAST

Searching in Escherichia coli BW25113 (Keio)

Found 134 curated entries in PaperBLAST's database that match '3.2.1.28' as complete word(s).

These curated entries have 79 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Escherichia coli BW25113, or try another query

b3519: cytoplasmic trehalase (NCBI)
is similar to:
PaperBLAST

TREF_ECOLI / P62601: Cytoplasmic trehalase; Alpha,alpha-trehalase; Alpha,alpha-trehalose glucohydrolase; EC 3.2.1.28 from Escherichia coli
TreF / b3519: cytoplasmic trehalase (EC 3.2.1.28) from Escherichia coli
AAC76544.1: trehalase (TreF;b3519) (EC 3.2.1.28)
treF / P62601: cytoplasmic trehalase (EC 3.2.1.28) from Escherichia coli

100% id,
100% cov

D4I261: alpha,alpha-trehalase (EC 3.2.1.28) from Erwinia amylovora

62% id,
99% cov

Q3BXX2: alpha,alpha-trehalase (EC 3.2.1.28) from Xanthomonas campestris

51% id,
92% cov

More...

b1197: periplasmic trehalase (NCBI)
is similar to:
PaperBLAST

TREA_ECOLI / P13482: Periplasmic trehalase; Alpha,alpha-trehalase; Alpha,alpha-trehalose glucohydrolase; Tre37A; EC 3.2.1.28 from Escherichia coli
Tre / b1197: periplasmic trehalase (EC 3.2.1.28) from Escherichia coli
AAC74281.1: α,α-trehalase (periplasmic) (TreA;OsmA) (Tre37A) (EC 3.2.1.28)
treA / P13482: periplasmic trehalase (EC 3.2.1.28) from Escherichia coli

100% id,
100% cov

AO356_24205: Alpha,alpha-trehalase (EC 3.2.1.28) from Pseudomonas fluorescens

54% id,
98% cov

Q3BXX2: alpha,alpha-trehalase (EC 3.2.1.28) from Xanthomonas campestris

53% id,
98% cov

More...

b4239: trehalose-6-P hydrolase (NCBI)
is similar to:
PaperBLAST

AAS80455.1: α,α-trehalase / α-glucosidase (TTC0107) (EC 3.2.1.20|3.2.1.28)

40% id,
92% cov

Dshi_1649: alpha-glucosidase / maltase / trehalase / sucrase (EC 3.2.1.48; EC 3.2.1.20; EC 3.2.1.28) from Dinoroseobacter shibae

32% id,
96% cov

b0403: maltodextrin glucosidase (NCBI)
is similar to:
PaperBLAST

AAS80455.1: α,α-trehalase / α-glucosidase (TTC0107) (EC 3.2.1.20|3.2.1.28)

31% id,
45% cov

b1309: putative polysaccharide hydrolase (VIMSS)
is similar to:
PaperBLAST

AAS80455.1: α,α-trehalase / α-glucosidase (TTC0107) (EC 3.2.1.20|3.2.1.28)

25% id,
53% cov

b1316: predicted hydrolase (NCBI)
is similar to:
PaperBLAST

ATC1_CANAL / Q5AAU5: Cell wall acid trehalase ATC1; Alpha,alpha-trehalase; Alpha,alpha-trehalose glucohydrolase; EC 3.2.1.28 from Candida albicans
Q5AAU5: alpha,alpha-trehalase (EC 3.2.1.28) from Candida albicans

22% id,
42% cov

AAV05390.1: acid trehalase (Atc1;CaATC1) (EC 3.2.1.28)

22% id,
41% cov

ATH1_CANGB / M1RNJ8: Periplasmic/secreted acid trehalase ATH1; cgATH1; EC 3.2.1.28 from Candida glabrata
AGG12634.1: acid trehalase (Ath1;CgATH1;CAGLOK05137g) (EC 3.2.1.28)

24% id,
28% cov

More...

b3571: periplasmic alpha-amylase precursor (NCBI)
is similar to:
PaperBLAST

AAS80455.1: α,α-trehalase / α-glucosidase (TTC0107) (EC 3.2.1.20|3.2.1.28)

29% id,
26% cov

Dshi_1649: alpha-glucosidase / maltase / trehalase / sucrase (EC 3.2.1.48; EC 3.2.1.20; EC 3.2.1.28) from Dinoroseobacter shibae

28% id,
27% cov

b3432: glycogen branching enzyme (NCBI)
is similar to:
PaperBLAST

AAS80455.1: α,α-trehalase / α-glucosidase (TTC0107) (EC 3.2.1.20|3.2.1.28)

31% id,
18% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory