Curated BLAST for Genomes

 

Curated BLAST

Searching in Escherichia coli BW25113 (Keio)

Found 37 curated entries in PaperBLAST's database that match '3.5.1.25'.

These curated entries have 28 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Escherichia coli BW25113, or try another query

b0677: N-acetylglucosamine-6-phosphate deacetylase (NCBI)
is similar to:
PaperBLAST

NAGA_ECO57 / P0AF19: N-acetylglucosamine-6-phosphate deacetylase; GlcNAc 6-P deacetylase; EC 3.5.1.25 from Escherichia coli
NAGA_ECOLI / P0AF18: N-acetylglucosamine-6-phosphate deacetylase; GlcNAc 6-P deacetylase; EC 3.5.1.25 from Escherichia coli
NagA / b0677: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) from Escherichia coli
AAG54999.1: EDL933_0745 (EC 3.5.1.25)
AAC73771.1: N-acetylglucosamine 6-phosphate deacetylase (NagA;b0677) (EC 3.5.1.25)
BAB34130.1: ECs0707 (EC 3.5.1.25)
nagA / P0AF18: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) from Escherichia coli

100% id,
100% cov

AAN79225.1: c0752 (NagA) (EC 3.5.1.25)

100% id,
100% cov

BAA22834.1: N-acetylglucosamine 6-phosphate deacetylase (NagA) (EC 3.5.1.25)

62% id,
99% cov

More...

b0512: allantoinase (NCBI)
is similar to:
PaperBLAST

Ga0059261_1645: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) from Sphingomonas koreensis

30% id,
18% cov

b2883: guanine deaminase (NCBI)
is similar to:
PaperBLAST

Q8DN83: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) from Streptococcus pneumoniae

61% id,
8% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3279081-3279641 (frame +3) on 7023
is similar to:
PaperBLAST

agaA / Q8XAC3: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) from Escherichia coli
Also see hits to annotated proteins above

100% id,
49% cov

Q8DN83: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) from Streptococcus pneumoniae
Also see hits to annotated proteins above

43% id,
47% cov

nagA / A3CQ16: N-acetylglucosamine-6-phosphate deacetylase subunit (EC 3.5.1.25) from Streptococcus sanguinis

42% id,
48% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory