Curated BLAST for Genomes

 

Curated BLAST

Searching in Escherichia coli BW25113 (Keio)

Found 4 curated entries in PaperBLAST's database that match '3.5.99.5' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Escherichia coli BW25113, or try another query

b4243: orf, hypothetical protein (VIMSS)
is similar to:
PaperBLAST

AMND_PSESP / Q9KWS2: 2-aminomuconate deaminase; EC 3.5.99.5 from Pseudomonas sp.
amnD / Q9KWS2: 2-aminomuconate deaminase monomer (EC 3.5.99.5) from Pseudomonas sp.

30% id,
93% cov

nbaF / Q83V27: 2-aminomuconate deaminase (EC 3.5.99.5) from Pseudomonas fluorescens

29% id,
92% cov

b3113: orf, hypothetical protein (VIMSS)
is similar to:
PaperBLAST

AMND_PSESP / Q9KWS2: 2-aminomuconate deaminase; EC 3.5.99.5 from Pseudomonas sp.
amnD / Q9KWS2: 2-aminomuconate deaminase monomer (EC 3.5.99.5) from Pseudomonas sp.

29% id,
92% cov

nbaF / Q83V27: 2-aminomuconate deaminase (EC 3.5.99.5) from Pseudomonas fluorescens

28% id,
92% cov

b1010: hypothetical protein (NCBI)
is similar to:
PaperBLAST

AMND_PSESP / Q9KWS2: 2-aminomuconate deaminase; EC 3.5.99.5 from Pseudomonas sp.
amnD / Q9KWS2: 2-aminomuconate deaminase monomer (EC 3.5.99.5) from Pseudomonas sp.

29% id,
94% cov

b1809: orf, hypothetical protein (VIMSS)
is similar to:
PaperBLAST

AMND_PSESP / Q9KWS2: 2-aminomuconate deaminase; EC 3.5.99.5 from Pseudomonas sp.
amnD / Q9KWS2: 2-aminomuconate deaminase monomer (EC 3.5.99.5) from Pseudomonas sp.

32% id,
60% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory