Curated BLAST for Genomes

 

Curated BLAST

Searching in Escherichia coli BW25113 (Keio)

Found 37 curated entries in PaperBLAST's database that match '3.5.99.6' as complete word(s).

These curated entries have 30 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Escherichia coli BW25113, or try another query

b0678: glucosamine-6-phosphate deaminase (NCBI)
is similar to:
PaperBLAST

NAGB_ECO57 / P0A760: Glucosamine-6-phosphate deaminase; GlcN6P deaminase; GNPDA; Glucosamine-6-phosphate isomerase; EC 3.5.99.6 from Escherichia coli
NAGB_ECOLI / P0A759: Glucosamine-6-phosphate deaminase; GlcN6P deaminase; GNPDA; Glucosamine-6-phosphate isomerase; EC 3.5.99.6 from Escherichia coli
GlmD / b0678: glucosamine-6-phosphate deaminase (EC 3.5.99.6) from Escherichia coli
nagB / PDB|1CD5: GlcN6P deaminase; EC 3.5.99.6 from Escherichia coli
nagB / P0A759: glucosamine-6-phosphate deaminase (EC 3.5.99.6) from Escherichia coli

100% id,
100% cov

E1C878: glucosamine-6-phosphate deaminase (EC 3.5.99.6) from Gallus gallus

60% id,
94% cov

U5LXR4: glucosamine-6-phosphate deaminase (EC 3.5.99.6) from Gallus gallus

61% id,
92% cov

More...

b3136: tagatose-6-phosphate ketose/aldose isomerase (NCBI)
is similar to:
PaperBLAST

AGAS_SHESA / A0KYQ7: D-galactosamine-6-phosphate deaminase AgaS; GalN-6-P deaminase; Glucosamine-6-phosphate deaminase; GlcN-6-P deaminase; EC 3.5.99.-; EC 3.5.99.6 from Shewanella sp.

45% id,
92% cov

b3141: galactosamine-6-phosphate isomerase (NCBI)
is similar to:
PaperBLAST

NAGB_BACSU / O35000: Glucosamine-6-phosphate deaminase 1; GlcN6P deaminase 1; GNPDA 1; Glucosamine-6-phosphate isomerase 1; EC 3.5.99.6 from Bacillus subtilis
O35000: glucosamine-6-phosphate deaminase (EC 3.5.99.6) from Bacillus subtilis

31% id,
96% cov

NAGB_STRCO / Q9K487: Glucosamine-6-phosphate deaminase; GlcN6P deaminase; GNPDA; Glucosamine-6-phosphate isomerase; EC 3.5.99.6 from Streptomyces coelicolor

34% id,
88% cov

GAMA_BACSU / O31458: Glucosamine-6-phosphate deaminase 2; GlcN6P deaminase 2; GNPDA 2; Glucosamine-6-phosphate isomerase 2; EC 3.5.99.6 from Bacillus subtilis

31% id,
92% cov

More...

b3718: hypothetical protein (NCBI)
is similar to:
PaperBLAST

GAMA_BACSU / O31458: Glucosamine-6-phosphate deaminase 2; GlcN6P deaminase 2; GNPDA 2; Glucosamine-6-phosphate isomerase 2; EC 3.5.99.6 from Bacillus subtilis

30% id,
98% cov

NAGB_BACSU / O35000: Glucosamine-6-phosphate deaminase 1; GlcN6P deaminase 1; GNPDA 1; Glucosamine-6-phosphate isomerase 1; EC 3.5.99.6 from Bacillus subtilis
O35000: glucosamine-6-phosphate deaminase (EC 3.5.99.6) from Bacillus subtilis

27% id,
99% cov

nagB / A3CLX4: glucosamine-6-phosphate deaminase subunit (EC 3.5.99.6) from Streptococcus sanguinis

27% id,
99% cov

More...

b3729: D-fructose-6-phosphate amidotransferase (NCBI)
is similar to:
PaperBLAST

AO353_04455: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Pseudomonas fluorescens

31% id,
96% cov

Sama_0945: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Shewanella amazonensis

29% id,
98% cov

BPHYT_RS02735: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Burkholderia phytofirmans

28% id,
99% cov

More...

b3371: putative transport protein (VIMSS)
is similar to:
PaperBLAST

BPHYT_RS02735: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Burkholderia phytofirmans

23% id,
94% cov

CCNA_00453: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Caulobacter crescentus

23% id,
88% cov

PGA1_c27890: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Phaeobacter inhibens

24% id,
77% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory