Curated BLAST for Genomes


Curated BLAST

Searching in Escherichia coli BW25113 (Keio)

Found 8 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Escherichia coli BW25113, or try another query

b0350: 2-keto-4-pentenoate hydratase (VIMSS)
is similar to:

AMNE_PSESP / Q9KWS3: 4-oxalocrotonate decarboxylase; EC from Pseudomonas sp.
amnE / Q9KWS3: 4-oxalocrotonate decarboxylase monomer (EC from Pseudomonas sp.

33% id,
99% cov

praD / C4TP06: 2-oxo-3-hexenedioate decarboxylase (EC from Paenibacillus sp.

33% id,
98% cov

B0VXM8: 2-oxo-3-hexenedioate decarboxylase (EC from Geobacillus stearothermophilus

32% id,
97% cov


The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory