Curated BLAST for Genomes

 

Curated BLAST

Searching in Escherichia coli BW25113 (Keio)

Found 67 curated entries in PaperBLAST's database that match '4.2.1.10' as complete word(s).

These curated entries have 49 distinct sequences.

Running ublast with E ≤ 0.01

Found 10 relevant proteins in Escherichia coli BW25113, or try another query

b1693: 3-dehydroquinate dehydratase (NCBI)
is similar to:
PaperBLAST

AROD_ECOLI / P05194: 3-dehydroquinate dehydratase; 3-dehydroquinase; Type I DHQase; Type I dehydroquinase; DHQ1; EC 4.2.1.10 from Escherichia coli
AroD / b1693: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Escherichia coli
aroD / RF|NP_416208.1: 3-dehydroquinate dehydratase; EC 4.2.1.10 from Escherichia coli
aroD / P05194: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Escherichia coli
P05194: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Escherichia coli

100% id,
100% cov

AROD_SALTY / P58687: 3-dehydroquinate dehydratase; 3-dehydroquinase; DHQD; Type I DHQase; Type I dehydroquinase; DHQ1; EC 4.2.1.10 from Salmonella typhimurium
P58687: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Salmonella enterica

80% id,
100% cov

AROD_SALTI / P24670: 3-dehydroquinate dehydratase; 3-dehydroquinase; Type I DHQase; Type I dehydroquinase; DHQ1; EC 4.2.1.10 from Salmonella typhi
P24670: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Salmonella enterica

77% id,
100% cov

More...

b1692: quinate/shikimate 5-dehydrogenase, NAD(P)-binding (NCBI)
is similar to:
PaperBLAST

Q6PUG0: shikimate dehydrogenase (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Nicotiana tabacum

33% id,
54% cov

DHQSD_ARATH / Q9SQT8: Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic; DHQ-SDH protein; DHQase-SORase; Protein EMBRYO DEFECTIVE 3004; EC 4.2.1.10; EC 1.1.1.25 from Arabidopsis thaliana
AT3G06350 / Q9SQT8: shikimate dehydrogenase (EC 1.1.1.25; EC 4.2.1.10) from Arabidopsis thaliana
Q9SQT8: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Arabidopsis thaliana

32% id,
46% cov

Q6PUF9: shikimate dehydrogenase (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Nicotiana tabacum

32% id,
46% cov

More...

b3281: dehydroshikimate reductase, NAD(P)-binding (NCBI)
is similar to:
PaperBLAST

Q6PUF9: shikimate dehydrogenase (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Nicotiana tabacum

32% id,
46% cov

DHQSD_ARATH / Q9SQT8: Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic; DHQ-SDH protein; DHQase-SORase; Protein EMBRYO DEFECTIVE 3004; EC 4.2.1.10; EC 1.1.1.25 from Arabidopsis thaliana
AT3G06350 / Q9SQT8: shikimate dehydrogenase (EC 1.1.1.25; EC 4.2.1.10) from Arabidopsis thaliana
Q9SQT8: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Arabidopsis thaliana

31% id,
46% cov

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

28% id,
18% cov

More...

b0908: 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI)
is similar to:
PaperBLAST

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

40% id,
28% cov

ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans
aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans

40% id,
27% cov

b0679: fused N-acetyl glucosamine specific PTS enzyme: IIC, IIB , and IIA components (NCBI)
is similar to:
PaperBLAST

B9CK59: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Atopobium rimae

26% id,
40% cov

b1621: fused maltose and glucose-specific PTS enzymes: IIB component -! IIC component (NCBI)
is similar to:
PaperBLAST

B9CK59: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Atopobium rimae

35% id,
27% cov

b3389: 3-dehydroquinate synthase (NCBI)
is similar to:
PaperBLAST

ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans
aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans

40% id,
22% cov

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

38% id,
21% cov

b1101: fused glucose-specific PTS enzymes: IIB component/IIC component (NCBI)
is similar to:
PaperBLAST

B9CK59: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Atopobium rimae

34% id,
22% cov

b1210: glutamyl-tRNA reductase (NCBI)
is similar to:
PaperBLAST

DHQSD_ARATH / Q9SQT8: Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic; DHQ-SDH protein; DHQase-SORase; Protein EMBRYO DEFECTIVE 3004; EC 4.2.1.10; EC 1.1.1.25 from Arabidopsis thaliana
AT3G06350 / Q9SQT8: shikimate dehydrogenase (EC 1.1.1.25; EC 4.2.1.10) from Arabidopsis thaliana
Q9SQT8: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Arabidopsis thaliana

37% id,
12% cov

Q6PUF9: shikimate dehydrogenase (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Nicotiana tabacum

37% id,
12% cov

b0388: shikimate kinase II (NCBI)
is similar to:
PaperBLAST

ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans
aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans

29% id,
10% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 10 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory