Curated BLAST for Genomes

 

Curated BLAST

Searching in Escherichia coli BW25113 (Keio)

Found 22 curated entries in PaperBLAST's database that match '4.2.1.22' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Escherichia coli BW25113, or try another query

b3939: cystathionine gamma-synthase (NCBI)
is similar to:
PaperBLAST

CTH / P32929: cystathionine γ-lyase monomer (EC 4.4.1.1; EC 4.4.1.2; EC 4.2.1.22) from Homo sapiens

42% id,
94% cov

b2414: cysteine synthase A, O-acetylserine sulfhydrolase A subunit (NCBI)
is similar to:
PaperBLAST

F9UT54: cysteine synthase (EC 2.5.1.47); cystathionine beta-synthase (EC 4.2.1.22) from Lactiplantibacillus plantarum

40% id,
97% cov

cysK / P56067: cystathionine β-synthase (O-acetyl-L-serine) monomer (EC 4.2.1.22; EC 2.5.1.134; EC 2.5.1.47) from Helicobacter pylori

39% id,
97% cov

Y1077_MYCTU / P9WP51: Probable cystathionine beta-synthase Rv1077; Beta-thionase; Serine sulfhydrase; EC 4.2.1.22 from Mycobacterium tuberculosis

41% id,
67% cov

More...

b2421: cysteine synthase B (O-acetylserine sulfhydrolase B) (NCBI)
is similar to:
PaperBLAST

cysK / P56067: cystathionine β-synthase (O-acetyl-L-serine) monomer (EC 4.2.1.22; EC 2.5.1.134; EC 2.5.1.47) from Helicobacter pylori

36% id,
99% cov

F9UT54: cysteine synthase (EC 2.5.1.47); cystathionine beta-synthase (EC 4.2.1.22) from Lactiplantibacillus plantarum

35% id,
98% cov

Y1077_MYCTU / P9WP51: Probable cystathionine beta-synthase Rv1077; Beta-thionase; Serine sulfhydrase; EC 4.2.1.22 from Mycobacterium tuberculosis

39% id,
66% cov

More...

b3008: cystathionine beta-lyase (NCBI)
is similar to:
PaperBLAST

CTH / P32929: cystathionine γ-lyase monomer (EC 4.4.1.1; EC 4.4.1.2; EC 4.2.1.22) from Homo sapiens

32% id,
92% cov

b3772: threonine dehydratase (NCBI)
is similar to:
PaperBLAST

CBS_APIME / Q2V0C9: Cystathionine beta-synthase; EC 4.2.1.22 from Apis mellifera
Q2V0C9: cystathionine beta-synthase (EC 4.2.1.22) from Apis mellifera

25% id,
65% cov

b2871: diaminopropionate ammonia-lyase (NCBI)
is similar to:
PaperBLAST

CBS_APIME / Q2V0C9: Cystathionine beta-synthase; EC 4.2.1.22 from Apis mellifera
Q2V0C9: cystathionine beta-synthase (EC 4.2.1.22) from Apis mellifera

23% id,
56% cov

CBS / A0A563XPB1: cystathionine β-synthase (EC 4.2.1.22) from Gallus gallus

25% id,
40% cov

CBS_HUMAN / P35520: Cystathionine beta-synthase; Beta-thionase; Serine sulfhydrase; EC 4.2.1.22 from Homo sapiens
CBS / P35520: cystathionine β-synthase monomer (EC 4.2.1.22) from Homo sapiens
P35520: cystathionine beta-synthase (EC 4.2.1.22) from Homo sapiens

25% id,
33% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory