Searching in Escherichia coli BW25113 (Keio)
Found 9 curated entries in PaperBLAST's database that match '4.2.1.40' as complete word(s).
These curated entries have 3 distinct sequences.
Running ublast with E ≤ 0.01
Found 2 relevant proteins in Escherichia coli BW25113, or try another query
b2787: (D)-glucarate dehydratase 1 (NCBI) is similar to: | PaperBLAST |
GUDD_ECOLI / P0AES2: Glucarate dehydratase; GDH; GlucD; D-glucarate dehydratase; EC 4.2.1.40 from Escherichia coli | 100% id, 100% cov |
GUDD_PSEPU / P42206: Glucarate dehydratase; GDH; GlucD; EC 4.2.1.40 from Pseudomonas putida | 72% id, 99% cov |
GUDD_ACIAD / Q6FFQ2: Glucarate dehydratase; GDH; GlucD; EC 4.2.1.40 from Acinetobacter baylyi | 70% id, 99% cov |
b2788: predicted glucarate dehydratase (NCBI) is similar to: | PaperBLAST |
GUDD_ACIAD / Q6FFQ2: Glucarate dehydratase; GDH; GlucD; EC 4.2.1.40 from Acinetobacter baylyi | 64% id, 99% cov |
GUDD_ECOLI / P0AES2: Glucarate dehydratase; GDH; GlucD; D-glucarate dehydratase; EC 4.2.1.40 from Escherichia coli | 63% id, 100% cov |
GUDD_PSEPU / P42206: Glucarate dehydratase; GDH; GlucD; EC 4.2.1.40 from Pseudomonas putida | 63% id, 98% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 2 reading frames. These were all redundant with annotated proteins.
Lawrence Berkeley National Laboratory