Curated BLAST for Genomes

 

Curated BLAST

Searching in Escherichia coli BW25113 (Keio)

Found 7 curated entries in PaperBLAST's database that match '4.2.1.42' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Escherichia coli BW25113, or try another query

b3128: (D)-galactarate dehydrogenase (NCBI)
is similar to:
PaperBLAST

GARD_ECOLI / P39829: Galactarate dehydratase (L-threo-forming); GalcD; EC 4.2.1.42 from Escherichia coli
YhaG / b3128: (EC 4.2.1.42) from Escherichia coli
garD / P39829: galactarate dehydratase (EC 4.2.1.42) from Escherichia coli

100% id,
100% cov

HSERO_RS15800: Galactarate dehydratase (EC 4.2.1.42) from Herbaspirillum seropedicae

67% id,
97% cov

PS417_04210: Galactarate dehydratase (EC 4.2.1.42) from Pseudomonas simiae

63% id,
98% cov

b3091: altronate hydrolase (NCBI)
is similar to:
PaperBLAST

PS417_04210: Galactarate dehydratase (EC 4.2.1.42) from Pseudomonas simiae

34% id,
97% cov

GARD_ECOLI / P39829: Galactarate dehydratase (L-threo-forming); GalcD; EC 4.2.1.42 from Escherichia coli
YhaG / b3128: (EC 4.2.1.42) from Escherichia coli
garD / P39829: galactarate dehydratase (EC 4.2.1.42) from Escherichia coli

32% id,
96% cov

HSERO_RS15800: Galactarate dehydratase (EC 4.2.1.42) from Herbaspirillum seropedicae

31% id,
93% cov

b1581: predicted dehydratase (NCBI)
is similar to:
PaperBLAST

TAGAD_SALTY / Q8ZL58: L-talarate/galactarate dehydratase; TalrD/GalrD; StTGD; EC 4.2.1.156; EC 4.2.1.42 from Salmonella typhimurium
Q8ZL58: L-talarate dehydratase (EC 4.2.1.156); galactarate dehydratase (EC 4.2.1.42) from Salmonella enterica

32% id,
35% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory