Curated BLAST for Genomes

 

Curated BLAST

Searching in Escherichia coli BW25113 (Keio)

Found 12 curated entries in PaperBLAST's database that match '4.2.1.43' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Escherichia coli BW25113, or try another query

b0268: 2-keto-3-deoxy gluconate (KDG) aldolase; CP4-6 prophage (NCBI)
is similar to:
PaperBLAST

HSERO_RS06870: L-2-keto-3-deoxyarabonate dehydratase (EC 4.2.1.43) from Herbaspirillum seropedicae

27% id,
92% cov

Ac3H11_603: L-2-keto-3-deoxyarabonate dehydratase (EC 4.2.1.43) from Acidovorax sp.

30% id,
80% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory