Curated BLAST for Genomes

 

Curated BLAST

Searching in Escherichia coli BW25113 (Keio)

Found 17 curated entries in PaperBLAST's database that match '4.2.1.82' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Escherichia coli BW25113, or try another query

b4297: KpLE2 phage-like element; predicted dehydratase (NCBI)
is similar to:
PaperBLAST

YJHG_ECOLI / P39358: D-xylonate dehydratase YjhG; EC 4.2.1.82 from Escherichia coli
YjhG / b4297: KpLE2 phage-like element; D-xylonate dehydratase (EC 4.2.1.82) from Escherichia coli
yjhG / P39358: KpLE2 phage-like element; D-xylonate dehydratase (EC 4.2.1.82) from Escherichia coli
P39358: xylonate dehydratase (EC 4.2.1.82) from Escherichia coli

100% id,
100% cov

YAGF_ECOLI / P77596: D-xylonate dehydratase YagF; EC 4.2.1.82 from Escherichia coli
YagF / b0269: CP4-6 prophage; D-xylonate dehydratase (EC 4.2.1.82) from Escherichia coli
yagF / P77596: CP4-6 prophage; D-xylonate dehydratase (EC 4.2.1.82) from Escherichia coli

68% id,
98% cov

XYLD_CAUVC / Q9A9Z2: D-xylonate dehydratase; XyDHT; Gluconate dehydratase; EC 4.2.1.82; EC 4.2.1.39 from Caulobacter vibrioides
Q9A9Z2: xylonate dehydratase (EC 4.2.1.82) from Caulobacter vibrioides

30% id,
63% cov

More...

b0269: CP4-6 prophage; predicted dehydratase (NCBI)
is similar to:
PaperBLAST

YAGF_ECOLI / P77596: D-xylonate dehydratase YagF; EC 4.2.1.82 from Escherichia coli
YagF / b0269: CP4-6 prophage; D-xylonate dehydratase (EC 4.2.1.82) from Escherichia coli
yagF / P77596: CP4-6 prophage; D-xylonate dehydratase (EC 4.2.1.82) from Escherichia coli

100% id,
100% cov

YJHG_ECOLI / P39358: D-xylonate dehydratase YjhG; EC 4.2.1.82 from Escherichia coli
YjhG / b4297: KpLE2 phage-like element; D-xylonate dehydratase (EC 4.2.1.82) from Escherichia coli
yjhG / P39358: KpLE2 phage-like element; D-xylonate dehydratase (EC 4.2.1.82) from Escherichia coli
P39358: xylonate dehydratase (EC 4.2.1.82) from Escherichia coli

68% id,
98% cov

AO356_28760: Xylonate dehydratase (EC 4.2.1.82) from Pseudomonas fluorescens

28% id,
91% cov

More...

b4478: galactonate dehydratase (NCBI)
is similar to:
PaperBLAST

SSO26655 / Q97VG1: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Saccharolobus solfataricus

30% id,
97% cov

XAD_HALVD / D4GP40: D-xylonate dehydratase; XAD; EC 4.2.1.82 from Haloferax volcanii
xacD / D4GP40: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Haloferax volcanii
D4GP40: xylonate dehydratase (EC 4.2.1.82) from Haloferax volcanii

29% id,
89% cov

b1851: phosphogluconate dehydratase (NCBI)
is similar to:
PaperBLAST

Pf6N2E2_1668: Xylonate dehydratase (EC 4.2.1.82) from Pseudomonas fluorescens

31% id,
84% cov

AO356_28760: Xylonate dehydratase (EC 4.2.1.82) from Pseudomonas fluorescens

31% id,
84% cov

YAGF_ECOLI / P77596: D-xylonate dehydratase YagF; EC 4.2.1.82 from Escherichia coli
YagF / b0269: CP4-6 prophage; D-xylonate dehydratase (EC 4.2.1.82) from Escherichia coli
yagF / P77596: CP4-6 prophage; D-xylonate dehydratase (EC 4.2.1.82) from Escherichia coli

29% id,
81% cov

More...

b1581: predicted dehydratase (NCBI)
is similar to:
PaperBLAST

XAD_HALVD / D4GP40: D-xylonate dehydratase; XAD; EC 4.2.1.82 from Haloferax volcanii
xacD / D4GP40: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Haloferax volcanii
D4GP40: xylonate dehydratase (EC 4.2.1.82) from Haloferax volcanii

29% id,
83% cov

SSO26655 / Q97VG1: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Saccharolobus solfataricus

31% id,
34% cov

b2247: predicted enolase (RefSeq)
is similar to:
PaperBLAST

SSO26655 / Q97VG1: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Saccharolobus solfataricus

25% id,
86% cov

b2787: (D)-glucarate dehydratase 1 (NCBI)
is similar to:
PaperBLAST

XAD_HALVD / D4GP40: D-xylonate dehydratase; XAD; EC 4.2.1.82 from Haloferax volcanii
xacD / D4GP40: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Haloferax volcanii
D4GP40: xylonate dehydratase (EC 4.2.1.82) from Haloferax volcanii

23% id,
84% cov

b3771: dihydroxy-acid dehydratase (NCBI)
is similar to:
PaperBLAST

AO356_28760: Xylonate dehydratase (EC 4.2.1.82) from Pseudomonas fluorescens

31% id,
59% cov

Pf6N2E2_1668: Xylonate dehydratase (EC 4.2.1.82) from Pseudomonas fluorescens

31% id,
59% cov

xylD / A0A0H3C6H6: xylonate dehydratase monomer (EC 4.2.1.82) from Caulobacter vibrioides
CCNA_00862: Xylonate dehydratase (EC 4.2.1.82) from Caulobacter crescentus

33% id,
55% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory