Curated BLAST for Genomes

 

Curated BLAST

Searching in Escherichia coli BW25113 (Keio)

Found 21 curated entries in PaperBLAST's database that match '4.2.3.1' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Escherichia coli BW25113, or try another query

b0004: threonine synthase (NCBI)
is similar to:
PaperBLAST

THRC_ECOLI / P00934: Threonine synthase; TS; EC 4.2.3.1 from Escherichia coli
ThrC / b0004: threonine synthase (EC 4.2.3.1) from Escherichia coli
thrC / GB|BAB96581.1: threonine synthase; EC 4.2.3.1 from Escherichia coli
thrC / P00934: threonine synthase (EC 4.2.3.1) from Escherichia coli
P00934: threonine synthase (EC 4.2.3.1) from Escherichia coli

100% id,
100% cov

N515DRAFT_0575: threonine synthase (EC 4.2.3.1) from Dyella japonica

37% id,
94% cov

Q8YFS0: threonine synthase (EC 4.2.3.1) from Brucella melitensis

34% id,
97% cov

More...

b3117: threonine dehydratase (NCBI)
is similar to:
PaperBLAST

O66740: threonine synthase (EC 4.2.3.1) from Aquifex aeolicus

27% id,
78% cov

b2421: cysteine synthase B (O-acetylserine sulfhydrolase B) (NCBI)
is similar to:
PaperBLAST

THRC_MYCTU / P9WG59: Threonine synthase; TS; EC 4.2.3.1 from Mycobacterium tuberculosis
P9WG59: threonine synthase (EC 4.2.3.1) from Mycobacterium tuberculosis

31% id,
32% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2536700-2537722 (frame -1) on 7023
is similar to:
PaperBLAST

THRC_MYCTU / P9WG59: Threonine synthase; TS; EC 4.2.3.1 from Mycobacterium tuberculosis
P9WG59: threonine synthase (EC 4.2.3.1) from Mycobacterium tuberculosis
Also see hits to annotated proteins above

31% id,
33% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory