Curated BLAST for Genomes

 

Curated BLAST

Searching in Escherichia coli BW25113 (Keio)

Found 110 curated entries in PaperBLAST's database that match '4.3.1.1'.

These curated entries have 73 distinct sequences.

Running ublast with E ≤ 0.01

Found 12 relevant proteins in Escherichia coli BW25113, or try another query

b1814: L-serine deaminase I (NCBI)
is similar to:
PaperBLAST

SdaA / b1814: L-serine deaminase I (EC 4.3.1.17) from Escherichia coli
sdaA / P16095: L-serine deaminase I (EC 4.3.1.17) from Escherichia coli
P16095: L-serine ammonia-lyase (EC 4.3.1.17) from Escherichia coli

100% id,
100% cov

SDHM_ECOLI / P30744: L-serine dehydratase 2; SDH 2; L-serine deaminase 2; L-SD2; EC 4.3.1.17 from Escherichia coli
SdaB / b2797: L-serine deaminase II (EC 4.3.1.17) from Escherichia coli
sdaB / GB|AAC75839.1: L-serine dehydratase 2; EC 4.3.1.17 from Escherichia coli
sdaB / P30744: L-serine deaminase II (EC 4.3.1.17) from Escherichia coli
P30744: L-serine ammonia-lyase (EC 4.3.1.17) from Escherichia coli

77% id,
100% cov

YhaQ / b4471: L-serine deaminase III (EC 4.3.1.17) from Escherichia coli
tdcG / P42630: L-serine deaminase III (EC 4.3.1.17) from Escherichia coli
P42630: L-serine ammonia-lyase (EC 4.3.1.17) from Escherichia coli

74% id,
100% cov

More...

b3772: threonine dehydratase (NCBI)
is similar to:
PaperBLAST

ILVA_ECOLI / P04968: L-threonine dehydratase biosynthetic IlvA; Threonine deaminase; EC 4.3.1.19 from Escherichia coli
Ile / b3772: threonine deaminase (EC 4.3.1.19) from Escherichia coli
ilvA / P04968: threonine deaminase (EC 4.3.1.19) from Escherichia coli
P04968: threonine ammonia-lyase (EC 4.3.1.19) from Escherichia coli

100% id,
100% cov

THDH_YEAST / P00927: Threonine dehydratase, mitochondrial; Threonine deaminase; EC 4.3.1.19 from Saccharomyces cerevisiae

48% id,
89% cov

V6QU65: threonine ammonia-lyase (EC 4.3.1.19) from Fusarium graminearum

47% id,
88% cov

More...

b2366: D-serine dehydratase (NCBI)
is similar to:
PaperBLAST

SDHD_ECOLI / P00926: D-serine dehydratase; D-serine deaminase; DSD; EC 4.3.1.18 from Escherichia coli
DsdA / b2366: D-serine ammonia-lyase (EC 4.3.1.18) from Escherichia coli
dsdA / P00926: D-serine ammonia-lyase (EC 4.3.1.18) from Escherichia coli
P00926: D-Serine ammonia-lyase (EC 4.3.1.18) from Escherichia coli

100% id,
100% cov

SDHD_ECOL6 / Q8FFF4: D-serine dehydratase; D-serine deaminase; DSD; EC 4.3.1.18 from Escherichia coli

99% id,
100% cov

Q8ZL08: D-Serine ammonia-lyase (EC 4.3.1.18) from Salmonella enterica

89% id,
100% cov

More...

b2871: diaminopropionate ammonia-lyase (NCBI)
is similar to:
PaperBLAST

DPAL_ECOLI / P66899: Diaminopropionate ammonia-lyase; DAPAL; 2,3-diaminopropionate ammonia-lyase; Alpha,beta-diaminopropionate ammonia-lyase; Diaminopropionatase; EC 4.3.1.15 from Escherichia coli
YgeX / b2871: 2,3-diaminopropionate ammonia-lyase (EC 4.3.1.15) from Escherichia coli
ygeX / P66899: 2,3-diaminopropionate ammonia-lyase (EC 4.3.1.15) from Escherichia coli
P66899: Diaminopropionate ammonia-lyase (EC 4.3.1.15) from Escherichia coli

100% id,
100% cov

DPAL_SALTY / P40817: Diaminopropionate ammonia-lyase; DAPAL; 2,3-diaminopropionate ammonia-lyase; Alpha,beta-diaminopropionate ammonia-lyase; Diaminopropionatase; EC 4.3.1.15 from Salmonella typhimurium
P40817: Diaminopropionate ammonia-lyase (EC 4.3.1.15) from Salmonella enterica

50% id,
97% cov

TSAL_THEMA / Q9WYJ1: L-threonine ammonia-lyase; L-serine ammonia-lyase; Threonine dehydratase; EC 4.3.1.19; EC 4.3.1.17 from Thermotoga maritima

22% id,
78% cov

More...

b4471: L-serine dehydratase 3 (NCBI)
is similar to:
PaperBLAST

YhaQ / b4471: L-serine deaminase III (EC 4.3.1.17) from Escherichia coli
tdcG / P42630: L-serine deaminase III (EC 4.3.1.17) from Escherichia coli
P42630: L-serine ammonia-lyase (EC 4.3.1.17) from Escherichia coli

100% id,
100% cov

SdaA / b1814: L-serine deaminase I (EC 4.3.1.17) from Escherichia coli
sdaA / P16095: L-serine deaminase I (EC 4.3.1.17) from Escherichia coli
P16095: L-serine ammonia-lyase (EC 4.3.1.17) from Escherichia coli

74% id,
100% cov

SDHM_ECOLI / P30744: L-serine dehydratase 2; SDH 2; L-serine deaminase 2; L-SD2; EC 4.3.1.17 from Escherichia coli
SdaB / b2797: L-serine deaminase II (EC 4.3.1.17) from Escherichia coli
sdaB / GB|AAC75839.1: L-serine dehydratase 2; EC 4.3.1.17 from Escherichia coli
sdaB / P30744: L-serine deaminase II (EC 4.3.1.17) from Escherichia coli
P30744: L-serine ammonia-lyase (EC 4.3.1.17) from Escherichia coli

73% id,
100% cov

More...

b3117: threonine dehydratase (NCBI)
is similar to:
PaperBLAST

TDCB_ECOLI / P0AGF6: L-threonine dehydratase catabolic TdcB; L-serine dehydratase; Threonine deaminase; EC 4.3.1.19; EC 4.3.1.17 from Escherichia coli
Tdc / b3117: catabolic threonine dehydratase (EC 4.3.1.17; EC 4.3.1.19) from Escherichia coli
tdcB / RF|NP_417587: threonine ammonia-lyase; EC 4.3.1.19 from Escherichia coli
tdcB / P0AGF6: catabolic threonine dehydratase (EC 4.3.1.17; EC 4.3.1.19) from Escherichia coli

100% id,
100% cov

TDCB_SALTY / P11954: L-threonine dehydratase catabolic TdcB; L-serine dehydratase; Threonine deaminase; EC 4.3.1.19; EC 4.3.1.17 from Salmonella typhimurium

95% id,
100% cov

A0QY48: L-serine ammonia-lyase (EC 4.3.1.17) from Mycolicibacterium smegmatis

40% id,
98% cov

More...

b2797: L-serine deaminase II (NCBI)
is similar to:
PaperBLAST

SDHM_ECOLI / P30744: L-serine dehydratase 2; SDH 2; L-serine deaminase 2; L-SD2; EC 4.3.1.17 from Escherichia coli
SdaB / b2797: L-serine deaminase II (EC 4.3.1.17) from Escherichia coli
sdaB / GB|AAC75839.1: L-serine dehydratase 2; EC 4.3.1.17 from Escherichia coli
sdaB / P30744: L-serine deaminase II (EC 4.3.1.17) from Escherichia coli
P30744: L-serine ammonia-lyase (EC 4.3.1.17) from Escherichia coli

100% id,
100% cov

SdaA / b1814: L-serine deaminase I (EC 4.3.1.17) from Escherichia coli
sdaA / P16095: L-serine deaminase I (EC 4.3.1.17) from Escherichia coli
P16095: L-serine ammonia-lyase (EC 4.3.1.17) from Escherichia coli

77% id,
100% cov

YhaQ / b4471: L-serine deaminase III (EC 4.3.1.17) from Escherichia coli
tdcG / P42630: L-serine deaminase III (EC 4.3.1.17) from Escherichia coli
P42630: L-serine ammonia-lyase (EC 4.3.1.17) from Escherichia coli

73% id,
100% cov

More...

b4139: aspartate ammonia-lyase (aspartase) (VIMSS)
is similar to:
PaperBLAST

ASPA_ECOLI / P0AC38: Aspartate ammonia-lyase; Aspartase; EC 4.3.1.1 from Escherichia coli
AspA / b4139: aspartate ammonia-lyase (EC 4.3.1.1) from Escherichia coli
aspA / P0AC38: aspartate ammonia-lyase (EC 4.3.1.1) from Escherichia coli
P0AC38: aspartate ammonia-lyase (EC 4.3.1.1) from Escherichia coli

100% id,
100% cov

Q0PC50: aspartate ammonia-lyase (EC 4.3.1.1) from Campylobacter jejuni

58% id,
99% cov

Q9HTD7: aspartate ammonia-lyase (EC 4.3.1.1) from Pseudomonas aeruginosa

58% id,
97% cov

More...

b1611: fumarate hydratase (NCBI)
is similar to:
PaperBLAST

Q9LCC6: aspartate ammonia-lyase (EC 4.3.1.1) from Bacillus sp.

41% id,
100% cov

Q9HTD7: aspartate ammonia-lyase (EC 4.3.1.1) from Pseudomonas aeruginosa

41% id,
97% cov

Q0PC50: aspartate ammonia-lyase (EC 4.3.1.1) from Campylobacter jejuni

39% id,
99% cov

More...

b1919: putative 1-aminocyclopropane-1-carboxylate deaminase (VIMSS)
is similar to:
PaperBLAST

O57809: L-serine ammonia-lyase (EC 4.3.1.17); D-Serine ammonia-lyase (EC 4.3.1.18) from Pyrococcus horikoshii

41% id,
95% cov

Q04513: threonine ammonia-lyase (EC 4.3.1.19) from Corynebacterium glutamicum

24% id,
48% cov

b2414: cysteine synthase A, O-acetylserine sulfhydrolase A subunit (NCBI)
is similar to:
PaperBLAST

SDSL_MOUSE / Q8R238: Serine dehydratase-like; L-serine deaminase; L-serine dehydratase/L-threonine deaminase; L-threonine dehydratase; TDH; SDH; EC 4.3.1.17; EC 4.3.1.19 from Mus musculus

26% id,
93% cov

SDSL_HUMAN / Q96GA7: Serine dehydratase-like; L-serine deaminase; L-serine dehydratase/L-threonine deaminase; L-threonine dehydratase; TDH; Serine dehydratase 2; SDH 2; EC 4.3.1.19; EC 4.3.1.17 from Homo sapiens
SDSL / Q96GA7: Serine dehydratase-like (EC 4.3.1.19; EC 4.3.1.17) from Homo sapiens
Q96GA7: L-serine ammonia-lyase (EC 4.3.1.17) from Homo sapiens

26% id,
81% cov

b2421: cysteine synthase B (O-acetylserine sulfhydrolase B) (NCBI)
is similar to:
PaperBLAST

TSAL_GEOSL / Q74FW6: L-threonine ammonia-lyase; L-serine ammonia-lyase; Threonine/serine ammonia-lyase; EC 4.3.1.19; EC 4.3.1.17 from Geobacter sulfurreducens
Q74FW6: threonine ammonia-lyase (EC 4.3.1.19) from Geobacter sulfurreducens

24% id,
79% cov

B1N2N4: L-serine ammonia-lyase (EC 4.3.1.17) from Entamoeba histolytica

30% id,
42% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 11 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory