Curated BLAST
Searching in Escherichia coli BW25113 (Keio)
Found 15 curated entries in PaperBLAST's database that match '5.1.3.4' as complete word(s).
These curated entries have 8 distinct sequences.
Running ublast with E ≤ 0.01
Found 4 relevant proteins in Escherichia coli BW25113, or try another query
b4198: L-ribulose 5-phosphate 4-epimerase (NCBI)
is similar to: | PaperBLAST |
ULAF_ECOLI / P39306: L-ribulose-5-phosphate 4-epimerase UlaF; L-ascorbate utilization protein F; Phosphoribulose isomerase; EC 5.1.3.4 from Escherichia coli
YjfX / b4198: L-ribulose-5-phosphate 4-epimerase UlaF (EC 5.1.3.4) from Escherichia coli
ulaF / P39306: L-ribulose-5-phosphate 4-epimerase UlaF (EC 5.1.3.4) from Escherichia coli | 100% id,
100% cov |
SGBE_ECOLI / P37680: L-ribulose-5-phosphate 4-epimerase SgbE; Phosphoribulose isomerase; EC 5.1.3.4 from Escherichia coli
YiaS / b3583: L-ribulose-5-phosphate 4-epimerase SgbE (EC 5.1.3.4) from Escherichia coli
sgbE / P37680: L-ribulose-5-phosphate 4-epimerase SgbE (EC 5.1.3.4) from Escherichia coli | 61% id,
100% cov |
ARAD_ECOLI / P08203: L-ribulose-5-phosphate 4-epimerase AraD; Phosphoribulose isomerase; EC 5.1.3.4 from Escherichia coli
AraD / b0061: L-ribulose-5-phosphate 4-epimerase AraD (EC 5.1.3.4) from Escherichia coli
araD / GB|BAB96630.1: L-ribulose-5-phosphate 4-epimerase; EC 5.1.3.4 from Escherichia coli
araD / P08203: L-ribulose-5-phosphate 4-epimerase AraD (EC 5.1.3.4) from Escherichia coli | 60% id,
100% cov |
ARAD_BACSU / P94525: L-ribulose-5-phosphate 4-epimerase; Phosphoribulose isomerase; EC 5.1.3.4 from Bacillus subtilis | 56% id,
100% cov |
CA265_RS08620: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) from Pedobacter sp. | 52% id,
98% cov |
Shewana3_2065: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) from Shewanella sp. | 50% id,
98% cov |
Echvi_0503: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) from Echinicola vietnamensis | 50% id,
97% cov |
C4B4W3: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) from Corynebacterium glutamicum | 41% id,
85% cov |
More... |
b3583: L-ribulose-5-phosphate 4-epimerase (NCBI)
is similar to: | PaperBLAST |
SGBE_ECOLI / P37680: L-ribulose-5-phosphate 4-epimerase SgbE; Phosphoribulose isomerase; EC 5.1.3.4 from Escherichia coli
YiaS / b3583: L-ribulose-5-phosphate 4-epimerase SgbE (EC 5.1.3.4) from Escherichia coli
sgbE / P37680: L-ribulose-5-phosphate 4-epimerase SgbE (EC 5.1.3.4) from Escherichia coli | 100% id,
100% cov |
ARAD_ECOLI / P08203: L-ribulose-5-phosphate 4-epimerase AraD; Phosphoribulose isomerase; EC 5.1.3.4 from Escherichia coli
AraD / b0061: L-ribulose-5-phosphate 4-epimerase AraD (EC 5.1.3.4) from Escherichia coli
araD / GB|BAB96630.1: L-ribulose-5-phosphate 4-epimerase; EC 5.1.3.4 from Escherichia coli
araD / P08203: L-ribulose-5-phosphate 4-epimerase AraD (EC 5.1.3.4) from Escherichia coli | 76% id,
100% cov |
ULAF_ECOLI / P39306: L-ribulose-5-phosphate 4-epimerase UlaF; L-ascorbate utilization protein F; Phosphoribulose isomerase; EC 5.1.3.4 from Escherichia coli
YjfX / b4198: L-ribulose-5-phosphate 4-epimerase UlaF (EC 5.1.3.4) from Escherichia coli
ulaF / P39306: L-ribulose-5-phosphate 4-epimerase UlaF (EC 5.1.3.4) from Escherichia coli | 61% id,
100% cov |
ARAD_BACSU / P94525: L-ribulose-5-phosphate 4-epimerase; Phosphoribulose isomerase; EC 5.1.3.4 from Bacillus subtilis | 59% id,
100% cov |
CA265_RS08620: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) from Pedobacter sp. | 49% id,
98% cov |
Echvi_0503: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) from Echinicola vietnamensis | 49% id,
97% cov |
Shewana3_2065: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) from Shewanella sp. | 49% id,
97% cov |
C4B4W3: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) from Corynebacterium glutamicum | 36% id,
93% cov |
More... |
b0061: L-ribulose-5-phosphate 4-epimerase (NCBI)
is similar to: | PaperBLAST |
ARAD_ECOLI / P08203: L-ribulose-5-phosphate 4-epimerase AraD; Phosphoribulose isomerase; EC 5.1.3.4 from Escherichia coli
AraD / b0061: L-ribulose-5-phosphate 4-epimerase AraD (EC 5.1.3.4) from Escherichia coli
araD / GB|BAB96630.1: L-ribulose-5-phosphate 4-epimerase; EC 5.1.3.4 from Escherichia coli
araD / P08203: L-ribulose-5-phosphate 4-epimerase AraD (EC 5.1.3.4) from Escherichia coli | 100% id,
100% cov |
SGBE_ECOLI / P37680: L-ribulose-5-phosphate 4-epimerase SgbE; Phosphoribulose isomerase; EC 5.1.3.4 from Escherichia coli
YiaS / b3583: L-ribulose-5-phosphate 4-epimerase SgbE (EC 5.1.3.4) from Escherichia coli
sgbE / P37680: L-ribulose-5-phosphate 4-epimerase SgbE (EC 5.1.3.4) from Escherichia coli | 76% id,
100% cov |
ULAF_ECOLI / P39306: L-ribulose-5-phosphate 4-epimerase UlaF; L-ascorbate utilization protein F; Phosphoribulose isomerase; EC 5.1.3.4 from Escherichia coli
YjfX / b4198: L-ribulose-5-phosphate 4-epimerase UlaF (EC 5.1.3.4) from Escherichia coli
ulaF / P39306: L-ribulose-5-phosphate 4-epimerase UlaF (EC 5.1.3.4) from Escherichia coli | 60% id,
100% cov |
ARAD_BACSU / P94525: L-ribulose-5-phosphate 4-epimerase; Phosphoribulose isomerase; EC 5.1.3.4 from Bacillus subtilis | 60% id,
100% cov |
CA265_RS08620: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) from Pedobacter sp. | 52% id,
98% cov |
Shewana3_2065: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) from Shewanella sp. | 52% id,
97% cov |
Echvi_0503: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) from Echinicola vietnamensis | 51% id,
97% cov |
C4B4W3: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) from Corynebacterium glutamicum | 39% id,
93% cov |
More... |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 3 reading frames. These were all redundant with annotated proteins.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory