Curated BLAST for Genomes

 

Curated BLAST

Searching in Escherichia coli BW25113 (Keio)

Found 43 curated entries in PaperBLAST's database that match '5.3.1.4' as complete word(s).

These curated entries have 37 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Escherichia coli BW25113, or try another query

b0062: L-arabinose isomerase (NCBI)
is similar to:
PaperBLAST

ARAA_ECOLI / P08202: L-arabinose isomerase; EC 5.3.1.4 from Escherichia coli
AraA / b0062: L-arabinose isomerase (EC 5.3.1.4) from Escherichia coli
araA / P08202: L-arabinose isomerase (EC 5.3.1.4) from Escherichia coli
P08202: L-arabinose isomerase (EC 5.3.1.4) from Escherichia coli

100% id,
100% cov

P58538: L-arabinose isomerase (EC 5.3.1.4) from Escherichia coli

100% id,
100% cov

Q8FL89: L-arabinose isomerase (EC 5.3.1.4) from Escherichia coli

99% id,
100% cov

More...

b3197: D-arabinose 5-phosphate isomerase (NCBI)
is similar to:
PaperBLAST

Q3IG38: L-arabinose isomerase (EC 5.3.1.4) from Pseudoalteromonas haloplanktis

55% id,
99% cov

b2708: orf, hypothetical protein (VIMSS)
is similar to:
PaperBLAST

Q3IG38: L-arabinose isomerase (EC 5.3.1.4) from Pseudoalteromonas haloplanktis

42% id,
99% cov

b2561: orf, hypothetical protein (VIMSS)
is similar to:
PaperBLAST

Q3IG38: L-arabinose isomerase (EC 5.3.1.4) from Pseudoalteromonas haloplanktis

26% id,
45% cov

b4089: transcriptional repressor of rpiB expression (VIMSS)
is similar to:
PaperBLAST

Q3IG38: L-arabinose isomerase (EC 5.3.1.4) from Pseudoalteromonas haloplanktis

25% id,
40% cov

b0222: phosphoheptose isomerase (NCBI)
is similar to:
PaperBLAST

Q3IG38: L-arabinose isomerase (EC 5.3.1.4) from Pseudoalteromonas haloplanktis

24% id,
35% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory