Curated BLAST for Genomes

 

Curated BLAST

Searching in Escherichia coli BW25113 (Keio)

Found 34 curated entries in PaperBLAST's database that match '5.3.1.8' as complete word(s).

These curated entries have 28 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Escherichia coli BW25113, or try another query

b1613: mannose-6-phosphate isomerase (VIMSS)
is similar to:
PaperBLAST

Pmi / b1613: mannose-6-phosphate isomerase (EC 5.3.1.8) from Escherichia coli
manA / P00946: mannose-6-phosphate isomerase (EC 5.3.1.8) from Escherichia coli

100% id,
100% cov

P25081: mannose-6-phosphate isomerase (EC 5.3.1.8) from Salmonella enterica

86% id,
100% cov

MPI_SCHPO / O43014: Mannose-6-phosphate isomerase; Phosphohexomutase; Phosphomannose isomerase; PMI; EC 5.3.1.8 from Schizosaccharomyces pombe

34% id,
99% cov

More...

b2049: mannose-1-phosphate guanyltransferase (NCBI)
is similar to:
PaperBLAST

ALGA_PSEAE / P07874: Alginate biosynthesis protein AlgA; EC 5.3.1.8; EC 2.7.7.13 from Pseudomonas aeruginosa
algA / P07874: phosphomannose isomerase (EC 5.3.1.8; EC 2.7.7.13) from Pseudomonas aeruginosa

55% id,
98% cov

algA / GI|31296823: alginate biosynthesis protein AlgA; EC 2.7.7.13; EC 5.3.1.8 from Pseudomonas fluorescens

52% id,
97% cov

PH0925 / O58649: GDP-D-mannose pyrophosphorylase (EC 2.7.7.13; EC 5.3.1.8) from Pyrococcus horikoshii

43% id,
99% cov

b3176: phosphoglucosamine mutase (NCBI)
is similar to:
PaperBLAST

ST0242 / Q976E4: hexose-6-phosphate mutase/isomerase (EC 5.3.1.8; EC 5.3.1.9; EC 5.4.2.10; EC 5.4.2.13) from Sulfurisphaera tokodaii

28% id,
99% cov

b2048: phosphomannomutase (NCBI)
is similar to:
PaperBLAST

ST0242 / Q976E4: hexose-6-phosphate mutase/isomerase (EC 5.3.1.8; EC 5.3.1.9; EC 5.4.2.10; EC 5.4.2.13) from Sulfurisphaera tokodaii

26% id,
96% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory