Curated BLAST for Genomes

 

Curated BLAST

Searching in Escherichia coli BW25113 (Keio)

Found 18 curated entries in PaperBLAST's database that match '5.4.2.7' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Escherichia coli BW25113, or try another query

b4383: phosphopentomutase (NCBI)
is similar to:
PaperBLAST

Tlr / b4383: phosphopentomutase (EC 5.4.2.7) from Escherichia coli
deoB / RF|NP_418800: phosphopentomutase; EC 5.4.2.7 from Escherichia coli
deoB: phosphopentomutase; EC 5.4.2.7 from Escherichia coli
deoB / P0A6K6: phosphopentomutase (EC 5.4.2.7) from Escherichia coli
P0A6K6: phosphopentomutase (EC 5.4.2.7) from Escherichia coli

100% id,
100% cov

SO1219: Phosphopentomutase (EC 5.4.2.7) from Shewanella oneidensis

71% id,
100% cov

Dshi_0829: Phosphopentomutase (EC 5.4.2.7) from Dinoroseobacter shibae

49% id,
100% cov

More...

b3380: predicted mutase (NCBI)
is similar to:
PaperBLAST

Q9WY14: phosphopentomutase (EC 5.4.2.7) from Thermotoga maritima

29% id,
98% cov

Q818Z9: phosphopentomutase (EC 5.4.2.7) from Bacillus cereus

35% id,
43% cov

B3ITC5: phosphopentomutase (EC 5.4.2.7) from Lysinibacillus sphaericus

36% id,
42% cov

More...

b2048: phosphomannomutase (NCBI)
is similar to:
PaperBLAST

PPM_THEKO / Q6I7B6: Phosphopentomutase; PPM; EC 5.4.2.7 from Thermococcus kodakarensis
Q6I7B6: phosphopentomutase (EC 5.4.2.7) from Thermococcus kodakarensis

27% id,
99% cov

PGM3_SCHPO / O74478: Probable phosphoribomutase; PRM; Phosphoglucomutase 3 homolog; PGM 3 homolog; EC 5.4.2.7 from Schizosaccharomyces pombe

26% id,
39% cov

b3176: phosphoglucosamine mutase (NCBI)
is similar to:
PaperBLAST

PPM_THEKO / Q6I7B6: Phosphopentomutase; PPM; EC 5.4.2.7 from Thermococcus kodakarensis
Q6I7B6: phosphopentomutase (EC 5.4.2.7) from Thermococcus kodakarensis

33% id,
66% cov

PGM3_SCHPO / O74478: Probable phosphoribomutase; PRM; Phosphoglucomutase 3 homolog; PGM 3 homolog; EC 5.4.2.7 from Schizosaccharomyces pombe

22% id,
71% cov

PGM3_YEAST / Q03262: Phosphoribomutase; PRM; Phosphoglucomutase 3; PGM 3; EC 5.4.2.7 from Saccharomyces cerevisiae

23% id,
50% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory