Curated BLAST for Genomes

 

Curated BLAST

Searching in Escherichia coli BW25113 (Keio)

Found 186 curated entries in PaperBLAST's database that match '6.2.1.1'.

These curated entries have 142 distinct sequences.

Running ublast with E ≤ 0.01

Found 12 relevant proteins in Escherichia coli BW25113, or try another query

b0335: predicted propionyl-CoA synthetase with ATPase domain (NCBI)
is similar to:
PaperBLAST

YahU / b0335: propionyl-CoA synthetase (EC 6.2.1.17) from Escherichia coli
prpE / P77495: propionyl-CoA synthetase (EC 6.2.1.17) from Escherichia coli
P77495: propionate-CoA ligase (EC 6.2.1.17) from Escherichia coli

100% id,
100% cov

PRPE_SALTY / P55912: Propionate--CoA ligase; Propionyl-CoA synthetase; EC 6.2.1.17 from Salmonella typhimurium
prpE / P55912: propionate-CoA ligase (EC 6.2.1.17) from Salmonella typhimurium

90% id,
100% cov

PGA1_c11900: Propionate--CoA ligase (EC 6.2.1.17) from Phaeobacter inhibens

46% id,
99% cov

More...

b4069: acetyl-coenzyme A synthetase (NCBI)
is similar to:
PaperBLAST

ACSA_ECOLI / P27550: Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 from Escherichia coli
AcsA / b4069: acetyl-CoA synthetase (AMP-forming) (EC 6.2.1.1; EC 6.2.1.17) from Escherichia coli
acs / P27550: acetyl-CoA synthetase (AMP-forming) (EC 6.2.1.17; EC 6.2.1.1) from Escherichia coli

100% id,
100% cov

ACSA_SALTY / Q8ZKF6: Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 from Salmonella typhimurium

95% id,
100% cov

AO356_18695: Acetyl-coenzyme A synthetase (EC 6.2.1.1) from Pseudomonas fluorescens

69% id,
100% cov

More...

b2584: fused predicted acyl-CoA synthetase: NAD(P)-binding subunit/ATP-binding subunit (NCBI)
is similar to:
PaperBLAST

C4LUV9: acetate-CoA ligase (ADP-forming) (EC 6.2.1.13) from Entamoeba histolytica

35% id,
100% cov

Q9NAT4: acetate-CoA ligase (ADP-forming) (EC 6.2.1.13) from Entamoeba histolytica

35% id,
100% cov

ACDA2_PYRFU / Q8U3D6: Acetate--CoA ligase [ADP-forming] II subunit alpha; ADP-forming acetyl coenzyme A synthetase II subunit alpha; ACS II subunit alpha; EC 6.2.1.13 from Pyrococcus furiosus

33% id,
98% cov

More...

b1701: short chain acyl-CoA synthetase, anaerobic (RefSeq)
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

33% id,
94% cov

U3MJP5: 4-coumarate-CoA ligase (EC 6.2.1.12) from Pueraria montana

31% id,
91% cov

A0A1L7H9K1: 4-coumarate-CoA ligase (EC 6.2.1.12) from Peucedanum praeruptorum

29% id,
94% cov

More...

b1805: acyl-CoA synthase (NCBI)
is similar to:
PaperBLAST

A0A0D4C3L0: 4-coumarate-CoA ligase (EC 6.2.1.12) from Plagiochasma appendiculatum

31% id,
96% cov

4CL2_ORYSJ / Q42982: 4-coumarate--CoA ligase 2; 4CL 2; Os4CL2; 4-coumaroyl-CoA synthase 2; EC 6.2.1.12 from Oryza sativa
Q42982: 4-coumarate-CoA ligase (EC 6.2.1.12) from Oryza sativa

31% id,
94% cov

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

32% id,
94% cov

More...

b0729: succinyl-CoA synthetase subunit alpha (NCBI)
is similar to:
PaperBLAST

ccsB / Q75VW6: citryl-CoA synthetase small subunit (EC 6.2.1.18) from Hydrogenobacter thermophilus
Q75VW6: citrate-CoA ligase (EC 6.2.1.18) from Hydrogenobacter thermophilus

35% id,
84% cov

b0037: predicted crotonobetaine CoA ligase:carnitine CoA ligase (RefSeq)
is similar to:
PaperBLAST

A0A1L7H9K1: 4-coumarate-CoA ligase (EC 6.2.1.12) from Peucedanum praeruptorum

31% id,
95% cov

4CL2 / P14913: 4-coumarate--CoA ligase 1 (EC 6.2.1.12) from Petroselinum crispum

30% id,
95% cov

4CL3_ARATH / Q9S777: 4-coumarate--CoA ligase 3; 4CL 3; 4-coumarate--CoA ligase isoform 3; At4CL3; 4-coumaroyl-CoA synthase 3; EC 6.2.1.12 from Arabidopsis thaliana
4CL3 / Q9S777: 4-coumarate coenzyme A ligase 3 (EC 6.2.1.12; EC 6.2.1.34) from Arabidopsis thaliana
Q9S777: 4-coumarate-CoA ligase (EC 6.2.1.12) from Arabidopsis thaliana

31% id,
90% cov

More...

b0594: 2,3-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex (NCBI)
is similar to:
PaperBLAST

D5LLN7: 4-coumarate-CoA ligase (EC 6.2.1.12) from Sorbus aucuparia

26% id,
97% cov

B8QN50: 4-coumarate-CoA ligase (EC 6.2.1.12) from Pinus radiata

26% id,
98% cov

P41636: 4-coumarate-CoA ligase (EC 6.2.1.12) from Pinus taeda

26% id,
98% cov

More...

b0586: enterobactin synthase multienzyme complex component, ATP-dependent (NCBI)
is similar to:
PaperBLAST

A0A1L7H9I4: 4-coumarate-CoA ligase (EC 6.2.1.12) from Peucedanum praeruptorum

24% id,
99% cov

AO353_03060: Acetyl-coenzyme A synthetase (EC 6.2.1.1) from Pseudomonas fluorescens

27% id,
79% cov

ACSA_SALTY / Q8ZKF6: Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 from Salmonella typhimurium

24% id,
81% cov

More...

b2836: 2-acyl-glycerophospho-ethanolamine acyltransferase (NCBI)
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

27% id,
86% cov

ACSA_BACSU / P39062: Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 from Bacillus subtilis

26% id,
86% cov

F1CYZ6: 4-coumarate-CoA ligase (EC 6.2.1.12) from Acetobacterium woodii

24% id,
94% cov

More...

b2260: O-succinylbenzoic acid--CoA ligase (NCBI)
is similar to:
PaperBLAST

A0A1L7H9I4: 4-coumarate-CoA ligase (EC 6.2.1.12) from Peucedanum praeruptorum

28% id,
68% cov

CCL2 / M4IRL4: isovalerate--CoA ligase (EC 6.2.1.1) from Humulus lupulus

29% id,
62% cov

CNL / J9ZU73: cinnamate:CoA ligase (EC 6.2.1.12) from Hypericum calycinum

28% id,
63% cov

More...

b1372: putative membrane protein (VIMSS)
is similar to:
PaperBLAST

ACSA_MYCS2 / A0R5G1: Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 from Mycolicibacterium smegmatis

25% id,
34% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 11 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1886091-1887848 (frame -3) on 7023
is similar to:
PaperBLAST

A0A0D4C3L0: 4-coumarate-CoA ligase (EC 6.2.1.12) from Plagiochasma appendiculatum
Also see hits to annotated proteins above

31% id,
97% cov

B7SBA2: 4-coumarate-CoA ligase (EC 6.2.1.12) from Physcomitrella patens
Also see hits to annotated proteins above

32% id,
25% cov

4CL4_ORYSJ / Q67W82: 4-coumarate--CoA ligase 4; 4CL 4; Os4CL4; 4-coumaroyl-CoA synthase 4; Protein RESISTANCE TO ALUMINUM 1; EC 6.2.1.12 from Oryza sativa
Q67W82: 4-coumarate-CoA ligase (EC 6.2.1.12) from Oryza sativa
Also see hits to annotated proteins above

31% id,
24% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory