Curated BLAST for Genomes

 

Curated BLAST

Searching in Escherichia coli BW25113 (Keio)

Found 11 curated entries in PaperBLAST's database that match '6.2.1.16' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Escherichia coli BW25113, or try another query

b1701: short chain acyl-CoA synthetase, anaerobic (RefSeq)
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

33% id,
94% cov

b1805: acyl-CoA synthase (NCBI)
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

32% id,
94% cov

b0037: predicted crotonobetaine CoA ligase:carnitine CoA ligase (RefSeq)
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

28% id,
93% cov

b4069: acetyl-coenzyme A synthetase (NCBI)
is similar to:
PaperBLAST

AACS_MOUSE / Q9D2R0: Acetoacetyl-CoA synthetase; EC 6.2.1.16 from Mus musculus
Q9D2R0: acetoacetate-CoA ligase (EC 6.2.1.16) from Mus musculus

26% id,
91% cov

AACS_RAT / Q9JMI1: Acetoacetyl-CoA synthetase; EC 6.2.1.16 from Rattus norvegicus

26% id,
91% cov

D6EQU8: acetoacetate-CoA ligase (EC 6.2.1.16) from Streptomyces lividans

26% id,
92% cov

More...

b0335: predicted propionyl-CoA synthetase with ATPase domain (NCBI)
is similar to:
PaperBLAST

AACS_RHIME / Q9Z3R3: Acetoacetyl-coenzyme A synthetase; Acetoacetyl-CoA synthetase; EC 6.2.1.16 from Rhizobium meliloti
SMc00774: Acetoacetate--CoA ligase (EC 6.2.1.16) from Sinorhizobium meliloti
Q9Z3R3: acetoacetate-CoA ligase (EC 6.2.1.16) from Sinorhizobium meliloti

25% id,
94% cov

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

25% id,
91% cov

AACS_MOUSE / Q9D2R0: Acetoacetyl-CoA synthetase; EC 6.2.1.16 from Mus musculus
Q9D2R0: acetoacetate-CoA ligase (EC 6.2.1.16) from Mus musculus

25% id,
93% cov

More...

b2836: 2-acyl-glycerophospho-ethanolamine acyltransferase (NCBI)
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

27% id,
86% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. Except for 3 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

36277-37869 (frame -2) on 7023
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.
Also see hits to annotated proteins above

28% id,
95% cov

4283442-4285442 (frame -3) on 7023
is similar to:
PaperBLAST

AACS_MOUSE / Q9D2R0: Acetoacetyl-CoA synthetase; EC 6.2.1.16 from Mus musculus
Q9D2R0: acetoacetate-CoA ligase (EC 6.2.1.16) from Mus musculus
Also see hits to annotated proteins above

26% id,
93% cov

AACS_RAT / Q9JMI1: Acetoacetyl-CoA synthetase; EC 6.2.1.16 from Rattus norvegicus
Also see hits to annotated proteins above

26% id,
93% cov

AACS_HUMAN / Q86V21: Acetoacetyl-CoA synthetase; Acyl-CoA synthetase family member 1; Protein sur-5 homolog; EC 6.2.1.16 from Homo sapiens
Q86V21: acetoacetate-CoA ligase (EC 6.2.1.16) from Homo sapiens
Also see hits to annotated proteins above

25% id,
93% cov

625281-626897 (frame +3) on 7023
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.
Also see hits to annotated proteins above

25% id,
94% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory