Curated BLAST for Genomes

 

Curated BLAST

Searching in Escherichia coli BW25113 (Keio)

Found 45 curated entries in PaperBLAST's database that match '6.3.5.4' as complete word(s).

These curated entries have 38 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Escherichia coli BW25113, or try another query

b0674: asparagine synthetase B (NCBI)
is similar to:
PaperBLAST

ASNB_ECOLI / P22106: Asparagine synthetase B [glutamine-hydrolyzing]; AS-B; EC 6.3.5.4 from Escherichia coli
AsnB / b0674: asparagine synthetase B (EC 6.3.5.4; EC 6.3.1.1; EC 3.5.1.38; EC 3.5.1.2) from Escherichia coli
asnB: asparagine synthetase B, glutamine-hydrolyzing; EC 6.3.5.4 from Escherichia coli
asnB / P22106: asparagine synthetase B (EC 6.3.5.4; EC 6.3.1.1; EC 3.5.1.38) from Escherichia coli
P22106: asparagine synthase (glutamine-hydrolysing) (EC 6.3.5.4) from Escherichia coli

100% id,
100% cov

Q9SP19: asparagine synthase (glutamine-hydrolysing) (EC 6.3.5.4) from Helianthus annuus

56% id,
99% cov

Q14SM9: asparagine synthase (glutamine-hydrolysing) (EC 6.3.5.4) from Glycine max

57% id,
97% cov

More...

b3744: asparagine synthetase AsnA (NCBI)
is similar to:
PaperBLAST

A4I213: asparagine synthase (glutamine-hydrolysing) (EC 6.3.5.4) from Leishmania infantum

56% id,
96% cov

b2890: lysine tRNA synthetase, constitutive (NCBI)
is similar to:
PaperBLAST

E9BLE1: asparagine synthase (glutamine-hydrolysing) (EC 6.3.5.4) from Leishmania donovani

23% id,
85% cov

b0930: asparaginyl-tRNA synthetase (NCBI)
is similar to:
PaperBLAST

E9BLE1: asparagine synthase (glutamine-hydrolysing) (EC 6.3.5.4) from Leishmania donovani

25% id,
49% cov

b4129: lysine tRNA synthetase, inducible (NCBI)
is similar to:
PaperBLAST

E9BLE1: asparagine synthase (glutamine-hydrolysing) (EC 6.3.5.4) from Leishmania donovani

28% id,
26% cov

b3729: D-fructose-6-phosphate amidotransferase (NCBI)
is similar to:
PaperBLAST

Q9SP20: asparagine synthase (glutamine-hydrolysing) (EC 6.3.5.4) from Helianthus annuus

33% id,
21% cov

asnB / GB|CAB15032.1: asparagine synthase (glutamine-hydrolysing) 1; EC 6.3.5.4 from Bacillus subtilis

25% id,
27% cov

asnO / GI|1934835: asparagine synthase (glutamine-hydrolysing) 3; EC 6.3.5.4 from Bacillus subtilis

27% id,
17% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory