Searching in Escherichia coli BW25113 (Keio)
Found 6 curated entries in PaperBLAST's database that match 'deoxy%ribonate transporter' as complete word(s).
These curated entries have 6 distinct sequences.
Running ublast with E ≤ 0.01
Found 8 relevant proteins in Escherichia coli BW25113, or try another query
| b2246: putative transport protein (VIMSS) is similar to: | PaperBLAST |
PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae | 38% id, 95% cov |
H281DRAFT_00642: 2-deoxy-D-ribonate transporter from Paraburkholderia bryophila | 36% id, 97% cov |
BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis | 35% id, 93% cov |
| b3667: regulator of uhpT (VIMSS) is similar to: | PaperBLAST |
BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis | 26% id, 93% cov |
PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae | 25% id, 82% cov |
| b2789: predicted D-glucarate transporter (NCBI) is similar to: | PaperBLAST |
BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis | 24% id, 96% cov |
BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans | 25% id, 90% cov |
H281DRAFT_00642: 2-deoxy-D-ribonate transporter from Paraburkholderia bryophila | 22% id, 96% cov |
| b4356: predicted transporter (NCBI) is similar to: | PaperBLAST |
BWI76_RS23725: 2-deoxy-D-ribonate transporter 2 from Klebsiella michiganensis | 23% id, 98% cov |
BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans | 25% id, 81% cov |
| b3093: hexuronate transporter (NCBI) is similar to: | PaperBLAST |
BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans | 24% id, 91% cov |
PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae | 23% id, 93% cov |
| b3666: sugar phosphate antiporter (NCBI) is similar to: | PaperBLAST |
BWI76_RS23725: 2-deoxy-D-ribonate transporter 2 from Klebsiella michiganensis | 22% id, 89% cov |
| b2182: bicyclomycin/multidrug efflux system (NCBI) is similar to: | PaperBLAST |
BWI76_RS23725: 2-deoxy-D-ribonate transporter 2 from Klebsiella michiganensis | 23% id, 40% cov |
| b1053: predicted drug efflux system (NCBI) is similar to: | PaperBLAST |
PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae | 25% id, 31% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 8 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
| 2918776-2920158 (frame -2) on 7023 is similar to: | PaperBLAST |
BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans | 25% id, 95% cov |
Lawrence Berkeley National Laboratory