Curated BLAST for Genomes

 

Curated BLAST

Searching in Escherichia coli BW25113 (Keio)

Found 1 curated entries in PaperBLAST's database that match 'glutamyl-tRNA(Gln) amidotransferase subunit D' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Escherichia coli BW25113, or try another query

b2957: periplasmic L-asparaginase II (NCBI)
is similar to:
PaperBLAST

gatD / O26802: glutamyl-tRNA(Gln) amidotransferase subunit D (EC 6.3.5.7) from Methanothermobacter thermautotrophicus

30% id,
76% cov

b1767: cytoplasmic asparaginase I (NCBI)
is similar to:
PaperBLAST

gatD / O26802: glutamyl-tRNA(Gln) amidotransferase subunit D (EC 6.3.5.7) from Methanothermobacter thermautotrophicus

35% id,
65% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory