Curated BLAST for Genomes


Curated BLAST

Searching in Sphingomonas koreensis DSMZ 15582 (Korea)

Found 24 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 19 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Sphingomonas koreensis DSMZ 15582, or try another query

Ga0059261_2975: Mannitol-1-phosphate/altronate dehydrogenases
is similar to:

I3E3X0: mannitol-1-phosphate 5-dehydrogenase (EC from Bacillus methanolicus

25% id,
61% cov

Ga0059261_2217: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
is similar to:

D0C7J2: mannitol-1-phosphate 5-dehydrogenase (EC; mannitol-1-phosphatase (EC from Acinetobacter baumannii

30% id,
29% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory