Curated BLAST for Genomes

 

Curated BLAST

Searching in Sphingomonas koreensis DSMZ 15582 (Korea)

Found 25 curated entries in PaperBLAST's database that match '1.1.1.28' as complete word(s).

These curated entries have 18 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Sphingomonas koreensis DSMZ 15582, or try another query

Ga0059261_0219: Lactate dehydrogenase and related dehydrogenases
is similar to:
PaperBLAST

Q9I530: D-lactate dehydrogenase (EC 1.1.1.28) from Pseudomonas aeruginosa

53% id,
99% cov

HtpH / b1380: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli
ldhA: D-lactate dehydrogenase; EC 1.1.1.28 from Escherichia coli
ldhA / P52643: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli

52% id,
100% cov

A0A140N893: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli

52% id,
100% cov

More...

Ga0059261_2669: Lactate dehydrogenase and related dehydrogenases
is similar to:
PaperBLAST

2KGR_VITVI / A5CAL1: Glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR; 2-keto-L-gulonate reductase; Vv2KGR; EC 1.1.1.26; EC 1.1.1.28; EC 1.1.1.79; EC 1.1.1.- from Vitis vinifera

36% id,
95% cov

Q9I530: D-lactate dehydrogenase (EC 1.1.1.28) from Pseudomonas aeruginosa

34% id,
92% cov

A0A0M3KL04: D-lactate dehydrogenase (EC 1.1.1.28) from Sporolactobacillus inulinus

30% id,
87% cov

More...

Ga0059261_2264: D-3-phosphoglycerate dehydrogenase
is similar to:
PaperBLAST

A0A0M3KL04: D-lactate dehydrogenase (EC 1.1.1.28) from Sporolactobacillus inulinus

32% id,
98% cov

ldhD / Q88VJ2: D-lactate dehydrogenase subunit (EC 1.1.1.28) from Lactobacillus plantarum
C0LJH4: D-lactate dehydrogenase (EC 1.1.1.28) from Lactobacillus plantarum

32% id,
89% cov

CH_091795: D-lactate dehydrogenase; EC 1.1.1.28 from Lactobacillus pentosus

32% id,
89% cov

More...

Ga0059261_1572: FAD/FMN-containing dehydrogenases
is similar to:
PaperBLAST

Q9YEU4: D-lactate dehydrogenase (EC 1.1.1.28); D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Aeropyrum pernix

32% id,
99% cov

A0A0G2K1W9: D-lactate dehydrogenase (EC 1.1.1.28) from Rattus norvegicus

28% id,
87% cov

Ga0059261_1479: Lactate dehydrogenase and related dehydrogenases
is similar to:
PaperBLAST

2KGR_VITVI / A5CAL1: Glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR; 2-keto-L-gulonate reductase; Vv2KGR; EC 1.1.1.26; EC 1.1.1.28; EC 1.1.1.79; EC 1.1.1.- from Vitis vinifera

40% id,
78% cov

Q9I530: D-lactate dehydrogenase (EC 1.1.1.28) from Pseudomonas aeruginosa

33% id,
92% cov

F8A9V0: D-lactate dehydrogenase (EC 1.1.1.28) from Thermodesulfatator indicus

33% id,
81% cov

More...

Ga0059261_2631: FAD/FMN-containing dehydrogenases
is similar to:
PaperBLAST

Q9YEU4: D-lactate dehydrogenase (EC 1.1.1.28); D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Aeropyrum pernix

31% id,
99% cov

A0A0G2K1W9: D-lactate dehydrogenase (EC 1.1.1.28) from Rattus norvegicus

29% id,
94% cov

Ga0059261_1691: FAD/FMN-containing dehydrogenases
is similar to:
PaperBLAST

Q9YEU4: D-lactate dehydrogenase (EC 1.1.1.28); D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Aeropyrum pernix

32% id,
93% cov

A0A0G2K1W9: D-lactate dehydrogenase (EC 1.1.1.28) from Rattus norvegicus

32% id,
44% cov

Ga0059261_0925: Phosphoglycerate dehydrogenase and related dehydrogenases
is similar to:
PaperBLAST

Q9I530: D-lactate dehydrogenase (EC 1.1.1.28) from Pseudomonas aeruginosa

28% id,
92% cov

vanH / Q7B609: D-lactate dehydrogenase (EC 1.1.1.28) from Enterococcus faecium

30% id,
77% cov

LDHD_PEDAC / Q59642: D-lactate/D-glycerate dehydrogenase; D-LDH/GDH; D-specific 2-hydroxyacid dehydrogenase; EC 1.1.1.28; EC 1.1.1.29 from Pediococcus acidilactici
ldhD / GI|897794: D-lactate dehydrogenase; EC 1.1.1.28; EC 1.1.1.81 from Pediococcus acidilactici

27% id,
77% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory