Curated BLAST for Genomes

 

Curated BLAST

Searching in Sphingomonas koreensis DSMZ 15582 (Korea)

Found 59 curated entries in PaperBLAST's database that match '1.1.1.85' as complete word(s).

These curated entries have 45 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Sphingomonas koreensis DSMZ 15582, or try another query

Ga0059261_3190: 3-isopropylmalate dehydrogenase
is similar to:
PaperBLAST

LEU3_ACIFR / Q56268: 3-isopropylmalate dehydrogenase; 3-IPM-DH; Beta-IPM dehydrogenase; IMDH; EC 1.1.1.85 from Acidithiobacillus ferrooxidans
Q56268: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) from Acidithiobacillus ferrooxidans

59% id,
99% cov

P61494: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) from Thermus thermophilus

54% id,
99% cov

Q00412: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) from Arthrospira platensis

57% id,
94% cov

More...

Ga0059261_0194: isocitrate dehydrogenase (NADP) (EC 1.1.1.42)
is similar to:
PaperBLAST

D2YZL2: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) from Shewanella benthica

25% id,
52% cov

Q8E9N3: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) from Shewanella oneidensis

30% id,
35% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory