Curated BLAST for Genomes


Curated BLAST

Searching in Sphingomonas koreensis DSMZ 15582 (Korea)

Found 7 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Sphingomonas koreensis DSMZ 15582, or try another query

Ga0059261_3190: 3-isopropylmalate dehydrogenase
is similar to:

hicdh / Q5SIJ1: homoisocitrate dehydrogenase subunit (EC from Thermus thermophilus
Q5SIJ1: homoisocitrate dehydrogenase (EC from Thermus thermophilus

43% id,
98% cov

AKSF_METJA / Q58991: Homoisocitrate dehydrogenase; HICDH; Homo(2)-isocitrate/homo(3)-isocitrate dehydrogenase; Isohomocitrate dehydrogenase; IHDH; NAD-dependent threo-isohomocitrate dehydrogenase; EC; EC 1.1.1.- from Methanocaldococcus jannaschii
aksF / Q58991: NAD-dependent threo-isocitrate dehydrogenase (EC from Methanocaldococcus jannaschii

40% id,
98% cov

LYS12_YEAST / P40495: Homoisocitrate dehydrogenase, mitochondrial; HIcDH; EC from Saccharomyces cerevisiae
P40495: homoisocitrate dehydrogenase (EC from Saccharomyces cerevisiae

38% id,
93% cov


The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory